C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000325954 RNF10-001 ENSG00000022840 9606 + 12:120534351-120577594 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000325954
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000325954 16.867±0.00 19.232±0.00 4.668±0.00 8.475±5.26 10.572±6.60 10.870±6.02 11.968±8.77 10.661±6.80 6.419±1.57 13.796±9.87 17.203±6.52 11.810±4.97 16.255±0.63 23.297±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CQ CIL_0009CQ_0001 VISTA 12:119991644-120595694
CIL_0007ZA CIL_0007ZA_0001 VISTA 12:120240385-120840841
CIL_00075W CIL_00075W_0002 CGP 12:120533480-120581398

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0010626 ISS negative regulation of Schwann cell proliferation
GO:0031643 ISS positive regulation of myelination
GO:0044212 ISS transcription regulatory region DNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0051865 IDA protein autoubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112096 Rnf10-001 protein_coding Mus_musculus 0 3858
ENSMUST00000112097 Rnf10-002 protein_coding Mus_musculus 0 3849
ENSMUST00000040555 Rnf10-003 protein_coding Mus_musculus 0 3840
ENSMUST00000139853 Rnf10-009 nonsense_mediated_decay Mus_musculus 0 2470
ENSMUST00000151085 Rnf10-005 processed_transcript Mus_musculus 0 641
ENSMUST00000133276 Rnf10-006 retained_intron Mus_musculus 0 387
ENSMUST00000128954 Rnf10-007 retained_intron Mus_musculus 0 377
ENSMUST00000153553 Rnf10-008 retained_intron Mus_musculus 0 315
ENSMUST00000152613 Rnf10-004 processed_transcript Mus_musculus 0 278

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