C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DEP domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000024526 DEPDC1 9606 - 1:68474152-68497221 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000370966 DEPDC1-001 68474152-68497221 protein_coding
  ENST00000456315 DEPDC1-002 68474152-68497114 protein_coding
  ENST00000488146 DEPDC1-005 68475574-68482238 retained_intron
  ENST00000489862 DEPDC1-003 68476897-68494531 nonsense_mediated_decay
  ENST00000525124 DEPDC1-004 68486941-68497082 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000370966ENST00000456315ENST00000488146ENST00000489862ENST00000525124
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000370966 0.017±0.00 N/A 0.071±0.00 0.069±0.00 N/A 0.043±0.03 0.033±0.01 N/A N/A 0.290±0.06 0.454±0.37 N/A
ENST00000456315 N/A N/A N/A 0.275±0.00 1.287±0.00 N/A N/A N/A 0.064±0.01 0.555±0.23 0.279±0.04 2.374±0.36
ENST00000488146 N/A 0.130±0.00 N/A N/A N/A N/A N/A 0.015±0.00 0.044±0.00 N/A N/A N/A
ENST00000489862 N/A N/A 0.149±0.00 0.621±0.00 N/A N/A N/A 0.017±0.01 N/A N/A N/A N/A
ENST00000525124 N/A N/A N/A N/A 2.377±0.00 N/A 0.229±0.00 N/A N/A 2.410±0.00 1.467±0.00 6.271±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000038 CIL_000038_0002 CGP 1:68428822-68497221

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0017053 IDA transcriptional repressor complex
GO:0035556 IEA intracellular signal transduction
GO:0043547 IEA positive regulation of GTPase activity
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018165 depdc1a DEP domain containing 1a protein_coding Danio_rerio
ENSMUSG00000028175 Depdc1a DEP domain containing 1a protein_coding Mus_musculus

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