C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_000038_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000054420-ENSDARG00000018165 CGP 7955 8:17208086-17244973
GeneTranscriptPositionBiotype
ENSDARG00000018165 (depdc1a)
DEP domain containing 1a
ENSDART00000049676 (depdc1a-001) 17232216-17244973 protein_coding
ENSDARG00000054420 (rpe65c)
retinal pigment epithelium-specific protein 65c
ENSDART00000038725 (rpe65c-201) 17208086-17231628 protein_coding
ENSDART00000076600 (rpe65c-001) 17221506-17231655 protein_coding
ENSDARG00000094752 (rpe65b)
retinal pigment epithelium-specific protein 65b
ENSDART00000076542 (rpe65b-001) 17207770-17217312 protein_coding
CIL_000038_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000116745-ENSG00000024526 CGP 9606 1:68428822-68497221
GeneTranscriptPositionBiotype
ENSG00000024526 (DEPDC1)
DEP domain containing 1
ENST00000370966 (DEPDC1-001) 68474152-68497221 protein_coding
ENST00000456315 (DEPDC1-002) 68474152-68497114 protein_coding
ENST00000488146 (DEPDC1-005) 68475574-68482238 retained_intron
ENST00000489862 (DEPDC1-003) 68476897-68494531 nonsense_mediated_decay
ENST00000525124 (DEPDC1-004) 68486941-68497082 protein_coding
ENSG00000116745 (RPE65)
retinal pigment epithelium-specific protein 65kDa
ENST00000262340 (RPE65-001) 68428822-68449959 protein_coding
ENSG00000233589 (RP4-694A7.2)
ENST00000425820 (RP4-694A7.2-001) 68479129-68483539 antisense
ENSG00000234264 (DEPDC1-AS1)
DEPDC1 antisense RNA 1
ENST00000428732 (DEPDC1-AS1-002) 68496676-68538627 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000038_0001ENSDARG00000018165ENSDART00000049676ENSDARG00000054420ENSDART00000038725ENSDART00000076600ENSDARG00000094752ENSDART00000076542CIL_000038_0002ENSG00000024526ENST00000370966ENST00000456315ENST00000488146ENST00000489862ENST00000525124ENSG00000116745ENST00000262340ENSG00000233589ENST00000425820ENSG00000234264ENST00000428732
Region; Gene Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000038_0001ENSDARG00000018165ENSDART00000049676ENSDARG00000054420ENSDART00000038725ENSDART00000076600ENSDARG00000094752ENSDART00000076542CIL_000038_0002ENSG00000024526ENST00000370966ENST00000456315ENST00000488146ENST00000489862ENST00000525124ENSG00000116745ENST00000262340ENSG00000233589ENST00000425820ENSG00000234264ENST00000428732
Gene Transcript Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000018165 ENSDART00000049676 N/A N/A 0.218±0.12 N/A N/A 0.389±0.27 11.817±4.00 0.294±0.00 N/A 0.110±0.00 N/A N/A N/A
ENSDARG00000054420 ENSDART00000038725 N/A N/A 3.572±0.78 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000076600 N/A N/A 1.403±0.21 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000094752 ENSDART00000076542 N/A N/A 1.226±0.45 N/A N/A 0.416±0.00 0.308±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000024526 ENST00000370966 0.017±0.00 N/A 0.071±0.00 0.069±0.00 N/A 0.043±0.03 0.033±0.01 N/A N/A N/A 0.290±0.06 0.454±0.37 N/A
ENST00000456315 N/A N/A N/A 0.275±0.00 1.287±0.00 N/A N/A N/A 0.064±0.01 N/A 0.555±0.23 0.279±0.04 2.374±0.36
ENST00000488146 N/A 0.130±0.00 N/A N/A N/A N/A N/A 0.015±0.00 0.044±0.00 N/A N/A N/A N/A
ENST00000489862 N/A N/A 0.149±0.00 0.621±0.00 N/A N/A N/A 0.017±0.01 N/A N/A N/A N/A N/A
ENST00000525124 N/A N/A N/A N/A 2.377±0.00 N/A 0.229±0.00 N/A N/A N/A 2.410±0.00 1.467±0.00 6.271±0.00
ENSG00000116745 ENST00000262340 0.048±0.00 N/A 0.819±0.52 0.017±0.00 N/A N/A N/A 0.018±0.00 N/A N/A 0.049±0.03 0.015±0.00 0.041±0.03
ENSG00000233589 ENST00000425820 0.027±0.00 N/A 0.078±0.00 0.065±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000234264 ENST00000428732 N/A N/A 0.065±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.036±0.00 0.157±0.04

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