C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribonuclease T2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000026297 RNASET2 9606 - 6:166929504-166957191 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000028008 RNASET2-012 166929545-166956584 nonsense_mediated_decay
  ENST00000358165 RNASET2-003 166933375-166957191 retained_intron
  ENST00000366855 RNASET2-007 166929504-166956611 protein_coding
  ENST00000421787 RNASET2-002 166929516-166956543 nonsense_mediated_decay
  ENST00000467705 RNASET2-008 166929633-166944053 processed_transcript
  ENST00000476238 RNASET2-006 166929540-166957184 protein_coding
  ENST00000478180 RNASET2-004 166929598-166957141 protein_coding
  ENST00000496851 RNASET2-005 166933425-166952534 processed_transcript
  ENST00000499370 RNASET2-010 166933365-166953580 retained_intron
  ENST00000508775 RNASET2-001 166929504-166956702 protein_coding
  ENST00000509073 RNASET2-013 166934039-166943239 processed_transcript
  ENST00000510083 RNASET2-011 166929518-166933049 retained_intron
  ENST00000611959 RNASET2-201 166938575-166956589 protein_coding
  ENST00000620173 RNASET2-202 166929525-166956589 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000028008ENST00000476238ENST00000478180ENST00000508775
Transcript ID Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000028008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.011±0.00
ENST00000476238 N/A N/A N/A N/A N/A N/A N/A N/A 68.228±31.99 23.557±12.48 11.662±0.00
ENST00000478180 N/A N/A N/A N/A N/A N/A N/A N/A 32.281±0.00 N/A N/A
ENST00000508775 50.755±0.00 2.704±0.00 12.381±0.00 14.554±3.84 8.673±0.00 10.178±0.00 7.178±1.48 9.350±0.00 27.266±3.20 24.437±5.68 13.135±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002QE CIL_0002QE_0002 CGP 6:166409364-166956124
CIL_0004W6 CIL_0004W6_0001 CGP 6:166929504-167052713

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0004540 IDA ribonuclease activity
GO:0005576 TAS extracellular region
GO:0005615 IDA extracellular space
GO:0005764 IDA lysosome
GO:0005788 IDA endoplasmic reticulum lumen
GO:0006401 IDA RNA catabolic process
GO:0033897 IEA ribonuclease T2 activity
GO:0070062 IDA extracellular vesicular exosome
GO:0090501 IDA RNA phosphodiester bond hydrolysis
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036282 rnaset2 ribonuclease T2 protein_coding Danio_rerio
ENSMUSG00000094724 Rnaset2b ribonuclease T2B protein_coding Mus_musculus
ENSMUSG00000095687 Rnaset2a ribonuclease T2A protein_coding Mus_musculus

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