C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004W6_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000026297-ENSG00000213066 CGP 9606 6:166929504-167052713
GeneTranscriptPositionBiotype
ENSG00000026297 (RNASET2)
ribonuclease T2 		ENST00000028008 (RNASET2-012) 166929545-166956584 nonsense_mediated_decay
ENST00000358165 (RNASET2-003) 166933375-166957191 retained_intron
ENST00000366855 (RNASET2-007) 166929504-166956611 protein_coding
ENST00000421787 (RNASET2-002) 166929516-166956543 nonsense_mediated_decay
ENST00000467705 (RNASET2-008) 166929633-166944053 processed_transcript
ENST00000476238 (RNASET2-006) 166929540-166957184 protein_coding
ENST00000478180 (RNASET2-004) 166929598-166957141 protein_coding
ENST00000496851 (RNASET2-005) 166933425-166952534 processed_transcript
ENST00000499370 (RNASET2-010) 166933365-166953580 retained_intron
ENST00000508775 (RNASET2-001) 166929504-166956702 protein_coding
ENST00000509073 (RNASET2-013) 166934039-166943239 processed_transcript
ENST00000510083 (RNASET2-011) 166929518-166933049 retained_intron
ENST00000611959 (RNASET2-201) 166938575-166956589 protein_coding
ENST00000620173 (RNASET2-202) 166929525-166956589 protein_coding
ENSG00000213066 (FGFR1OP)
FGFR1 oncogene partner 		ENST00000349556 (FGFR1OP-002) 166999408-167040317 protein_coding
ENST00000366847 (FGFR1OP-001) 166999182-167052713 protein_coding
ENST00000476078 (FGFR1OP-004) 166999617-167004304 processed_transcript
ENST00000488525 (FGFR1OP-006) 167024790-167033882 processed_transcript
ENST00000494781 (FGFR1OP-003) 166999457-167011691 processed_transcript
ENST00000496181 (FGFR1OP-005) 167022426-167025211 processed_transcript
ENST00000622353 (FGFR1OP-201) 166999317-167042418 protein_coding
ENSG00000227598 (RP1-167A14.2)
 ENST00000444102 (RP1-167A14.2-001) 166969626-166999065 antisense
ENSG00000265828 (MIR3939)
microRNA 3939 		ENST00000582614 (MIR3939-201) 166997807-166997912 miRNA
ENSG00000272980 (CCR6)
chemokine (C-C motif) receptor 6 		ENST00000400926 (CCR6-201) 167111807-167139141 protein_coding
ENST00000609590 (CCR6-001) 166999405-167139141 retained_intron

Homo sapiens Ensembl (GRCh38)

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CIL_0004W6_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000095687-ENSMUSG00000069135 CGP 10090 17:8128610-8196804
GeneTranscriptPositionBiotype
ENSMUSG00000069135 (Fgfr1op)
Fgfr1 oncogene partner 		ENSMUST00000024636 (Fgfr1op-002) 8165540-8196475 protein_coding
ENSMUST00000097419 (Fgfr1op-001) 8165501-8196804 protein_coding
ENSMUST00000161898 (Fgfr1op-004) 8182247-8194945 protein_coding
ENSMUST00000162586 (Fgfr1op-003) 8165520-8176081 retained_intron
ENSMUSG00000095687 (Rnaset2a)
ribonuclease T2A 		ENSMUST00000097420 (Rnaset2a-201) 8128610-8148097 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004W6_0001ENSG00000026297ENST00000028008ENST00000358165ENST00000366855ENST00000421787ENST00000467705ENST00000476238ENST00000478180ENST00000496851ENST00000499370ENST00000508775ENST00000509073ENST00000510083ENST00000611959ENST00000620173ENSG00000213066ENST00000349556ENST00000366847ENST00000476078ENST00000488525ENST00000494781ENST00000496181ENST00000622353ENSG00000227598ENST00000444102ENSG00000265828ENST00000582614ENSG00000272980ENST00000400926ENST00000609590CIL_0004W6_0002ENSMUSG00000069135ENSMUST00000024636ENSMUST00000097419ENSMUST00000161898ENSMUST00000162586ENSMUSG00000095687ENSMUST00000097420
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004W6_0001ENSG00000026297ENST00000028008ENST00000476238ENST00000478180ENST00000508775ENSG00000213066ENST00000349556ENST00000366847ENST00000622353ENSG00000227598ENST00000444102ENSG00000265828ENST00000582614ENSG00000272980ENST00000400926ENST00000609590CIL_0004W6_0002ENSMUSG00000069135ENSMUST00000024636ENSMUST00000097419ENSMUST00000161898ENSMUST00000162586ENSMUSG00000095687ENSMUST00000097420
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000026297 ENST00000028008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.011±0.00
ENST00000358165 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000366855 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000421787 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467705 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476238 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 68.228±31.99 23.557±12.48 11.662±0.00
ENST00000478180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 32.281±0.00 N/A N/A
ENST00000496851 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000499370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508775 N/A 50.755±0.00 2.704±0.00 12.381±0.00 14.554±3.84 8.673±0.00 N/A 10.178±0.00 7.178±1.48 9.350±0.00 N/A 27.266±3.20 24.437±5.68 13.135±0.00
ENST00000509073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611959 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213066 ENST00000349556 1.138±0.00 N/A 1.952±0.00 1.940±0.56 2.411±1.33 3.609±1.40 1.225±0.08 5.111±0.12 2.190±0.85 1.839±0.80 0.513±0.04 14.176±11.29 2.311±1.00 30.911±7.83
ENST00000366847 0.078±0.00 0.299±0.00 0.222±0.00 0.150±0.00 0.141±0.04 0.218±0.07 0.115±0.01 0.323±0.01 0.140±0.00 0.153±0.03 0.021±0.00 1.294±0.95 0.096±0.00 0.501±0.00
ENST00000476078 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488525 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494781 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496181 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622353 0.496±0.00 1.349±0.00 0.763±0.00 1.083±0.30 1.332±0.09 0.990±0.00 0.793±0.44 1.715±0.00 1.256±0.69 0.731±0.00 0.341±0.06 7.504±6.43 0.781±0.12 6.696±2.99
ENSG00000227598 ENST00000444102 0.101±0.00 N/A 0.496±0.00 0.337±0.00 N/A N/A N/A 0.584±0.48 N/A N/A N/A 0.297±0.14 0.303±0.00 0.194±0.00
ENSG00000265828 ENST00000582614 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.214±0.00
ENSG00000272980 ENST00000400926 N/A 1.082±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609590 N/A N/A N/A 0.257±0.00 N/A 0.848±0.00 N/A N/A 0.281±0.00 0.535±0.00 N/A 1.493±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000069135 ENSMUST00000024636 1.813±0.26 0.605±0.29 5.962±0.13 4.738±1.25 1.584±0.29 1.241±0.26 2.043±0.29 2.124±0.35 2.954±1.71 1.861±0.86 1.705±0.31 2.440±1.18 4.978±1.20 5.869±1.64
ENSMUST00000097419 0.380±0.00 0.275±0.10 N/A N/A N/A 0.173±0.00 N/A 0.513±0.01 0.415±0.04 N/A 2.235±0.42 0.835±0.33 0.658±0.00 7.670±3.51
ENSMUST00000161898 N/A 0.368±0.00 N/A 3.221±0.00 0.478±0.00 N/A N/A N/A N/A N/A N/A 4.432±0.00 N/A 23.659±0.00
ENSMUST00000162586 N/A 0.146±0.00 N/A 1.959±0.00 0.700±0.00 N/A N/A N/A N/A N/A N/A 0.679±0.20 N/A 23.081±0.00
ENSMUSG00000095687 ENSMUST00000097420 13.637±7.41 56.064±9.49 32.161±17.49 6.332±6.44 15.665±10.54 38.955±16.93 9.687±3.02 30.614±8.56 14.594±8.72 22.689±5.99 1.136±0.32 20.626±14.65 3.614±3.14 4.297±2.48

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