C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: aryl hydrocarbon receptor nuclear translocator-like 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000029153 ARNTL2 9606 + 12:27332854-27425289 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261178 ARNTL2-006 27333055-27420590 protein_coding
  ENST00000266503 ARNTL2-001 27333055-27420894 protein_coding
  ENST00000311001 ARNTL2-005 27333055-27420533 protein_coding
  ENST00000395901 ARNTL2-004 27332920-27420533 protein_coding
  ENST00000457040 ARNTL2-008 27368295-27420725 protein_coding
  ENST00000539558 ARNTL2-009 27368317-27377503 processed_transcript
  ENST00000542388 ARNTL2-007 27368336-27420590 protein_coding
  ENST00000544915 ARNTL2-002 27332854-27425289 protein_coding
  ENST00000546179 ARNTL2-003 27332920-27420549 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261178ENST00000266503ENST00000311001ENST00000395901ENST00000542388ENST00000544915
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261178 N/A 0.154±0.00 0.883±0.00 0.558±0.16 0.710±0.00 0.303±0.00 N/A N/A N/A N/A 5.284±0.00 N/A N/A
ENST00000266503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.320±0.04 N/A
ENST00000311001 0.500±0.00 N/A 0.730±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000395901 N/A N/A N/A N/A N/A N/A N/A N/A 1.313±0.00 N/A N/A N/A N/A
ENST00000542388 N/A N/A 1.314±0.00 N/A 0.634±0.00 0.120±0.00 0.434±0.00 0.681±0.07 0.467±0.00 0.334±0.00 3.032±2.55 1.037±0.31 0.982±0.02
ENST00000544915 0.782±0.00 0.038±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.863±0.29 0.227±0.00 0.649±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056J CIL_00056J_0001 CGP 12:27243968-27425289
CIL_00056I CIL_00056I_0001 CGP 12:27332854-27502185

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000982 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0004871 IEA signal transducer activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005667 IEA transcription factor complex
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0006355 NAS:IEA regulation of transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0007165 IEA signal transduction
GO:0007623 IDA circadian rhythm
GO:0009649 NAS entrainment of circadian clock
GO:0042753 ISS positive regulation of circadian rhythm
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046983 IEA protein dimerization activity
GO:0070888 IDA E-box binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000040187 Arntl2 aryl hydrocarbon receptor nuclear translocator-like 2 protein_coding Mus_musculus

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