C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: aryl hydrocarbon receptor nuclear translocator-like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000542388 ARNTL2-007 ENSG00000029153 9606 + 12:27368336-27420590 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000542388
Transcript ID Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000542388 1.314±0.00 0.634±0.00 0.120±0.00 0.434±0.00 0.681±0.07 0.467±0.00 0.334±0.00 3.032±2.55 1.037±0.31 0.982±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056J CIL_00056J_0001 CGP 12:27243968-27425289
CIL_00056I CIL_00056I_0001 CGP 12:27332854-27502185

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000982 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0004871 IEA signal transducer activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005667 IEA transcription factor complex
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0006355 NAS:IEA regulation of transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0007165 IEA signal transduction
GO:0007623 IDA circadian rhythm
GO:0009649 NAS entrainment of circadian clock
GO:0042753 ISS positive regulation of circadian rhythm
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046983 IEA protein dimerization activity
GO:0070888 IDA E-box binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111639 Arntl2-001 protein_coding Mus_musculus 0 891
ENSMUST00000111636 Arntl2-003 protein_coding Mus_musculus 0 883
ENSMUST00000080530 Arntl2-201 protein_coding Mus_musculus 0 881
ENSMUST00000129788 Arntl2-004 nonsense_mediated_decay Mus_musculus 0 593
ENSMUST00000111638 Arntl2-005 protein_coding Mus_musculus 0 220

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