C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: rabaptin, RAB GTPase binding effector protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000029725 RABEP1 9606 + 17:5282265-5385812 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000341923 RABEP1-002 5282487-5383223 protein_coding
  ENST00000537505 RABEP1-001 5282300-5385812 protein_coding
  ENST00000570487 RABEP1-005 5332055-5336689 protein_coding
  ENST00000572250 RABEP1-007 5377211-5381721 protein_coding
  ENST00000574568 RABEP1-006 5354401-5361629 protein_coding
  ENST00000575475 RABEP1-003 5282322-5378693 retained_intron
  ENST00000575991 RABEP1-004 5282265-5308802 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000537505
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000537505 14.618±0.00 13.900±0.00 3.519±0.00 18.474±5.97 16.114±0.00 9.608±3.44 9.000±5.50 10.877±4.59 6.435±1.32 8.700±0.62 10.583±5.89 9.344±3.52 11.037±4.80 16.948±0.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020X CIL_00020X_0001 CGP 17:5208961-5385812
CIL_00060J CIL_00060J_0002 CGP 17:5282265-5420160

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005515 IPI protein binding
GO:0005768 IDA endosome
GO:0005769 TAS early endosome
GO:0006897 IEA endocytosis
GO:0006915 IEA apoptotic process
GO:0008083 IEA growth factor activity
GO:0015031 IEA protein transport
GO:0030139 IDA endocytic vesicle
GO:0042803 IPI protein homodimerization activity
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043547 IEA positive regulation of GTPase activity
GO:0061025 TAS membrane fusion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059600 rabep1 rabaptin, RAB GTPase binding effector protein 1 protein_coding Danio_rerio
ENSMUSG00000020817 Rabep1 rabaptin, RAB GTPase binding effector protein 1 protein_coding Mus_musculus

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