C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: rabaptin, RAB GTPase binding effector protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000537505 RABEP1-001 ENSG00000029725 9606 + 17:5282300-5385812 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000537505
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000537505 14.618±0.00 13.900±0.00 3.519±0.00 18.474±5.97 16.114±0.00 9.608±3.44 9.000±5.50 10.877±4.59 6.435±1.32 8.700±0.62 10.583±5.89 9.344±3.52 11.037±4.80 16.948±0.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020X CIL_00020X_0001 CGP 17:5208961-5385812
CIL_00060J CIL_00060J_0002 CGP 17:5282265-5420160

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005515 IPI protein binding
GO:0005768 IDA endosome
GO:0005769 TAS early endosome
GO:0006897 IEA endocytosis
GO:0006915 IEA apoptotic process
GO:0008083 IEA growth factor activity
GO:0015031 IEA protein transport
GO:0030139 IDA endocytic vesicle
GO:0042803 IPI protein homodimerization activity
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043547 IEA positive regulation of GTPase activity
GO:0061025 TAS membrane fusion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000076270 Rabep1-001 protein_coding Mus_musculus 0 4037
ENSMUST00000177731 Rabep1-004 protein_coding Mus_musculus 0 3605
ENSMUST00000108533 Rabep1-008 protein_coding Mus_musculus 0 3555
ENSMUST00000178245 Rabep1-007 protein_coding Mus_musculus 0 3158
ENSMUST00000081362 Rabep1-002 protein_coding Mus_musculus 0 2490
ENSMUST00000100928 Rabep1-003 protein_coding Mus_musculus 0 2403
ENSMUST00000142220 Rabep1-005 retained_intron Mus_musculus 0 1797
ENSMUST00000179114 Rabep1-006 protein_coding Mus_musculus 0 1192

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