C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: rabaptin, RAB GTPase binding effector protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020817 Rabep1 10090 + 11:70844778-70943105 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000076270 Rabep1-001 70844778-70943105 protein_coding
  ENSMUST00000081362 Rabep1-002 70844975-70940483 protein_coding
  ENSMUST00000100928 Rabep1-003 70844799-70941298 protein_coding
  ENSMUST00000108533 Rabep1-008 70844942-70940646 protein_coding
  ENSMUST00000142220 Rabep1-005 70844782-70941303 retained_intron
  ENSMUST00000177731 Rabep1-004 70844925-70940940 protein_coding
  ENSMUST00000178245 Rabep1-007 70844975-70940483 protein_coding
  ENSMUST00000179114 Rabep1-006 70844792-70894121 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000076270ENSMUST00000177731ENSMUST00000178245ENSMUST00000179114
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000076270 5.491±0.00 N/A 6.494±0.38 16.160±4.19 4.564±1.15 2.915±0.33 3.654±0.41 3.214±1.14 3.534±0.80 3.717±0.30 5.641±1.20 8.520±4.12 7.848±1.17 N/A
ENSMUST00000177731 N/A N/A N/A 18.179±0.00 N/A N/A N/A N/A N/A N/A N/A 19.573±0.00 13.774±1.18 13.351±0.00
ENSMUST00000178245 N/A N/A N/A 23.675±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 10.003±0.43 12.297±0.00
ENSMUST00000179114 N/A 131.575±111.16 N/A N/A 21.270±4.51 N/A N/A N/A N/A N/A N/A 15.385±4.79 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020X CIL_00020X_0002 CGP 11:70790932-70943105
CIL_00060J CIL_00060J_0003 CGP 11:70844778-70969973

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005515 IPI protein binding
GO:0005768 IDA endosome
GO:0006897 IEA endocytosis
GO:0006915 IEA apoptotic process
GO:0008083 IEA growth factor activity
GO:0015031 IEA protein transport
GO:0030139 ISS endocytic vesicle
GO:0042803 IEA protein homodimerization activity
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059600 rabep1 rabaptin, RAB GTPase binding effector protein 1 protein_coding Danio_rerio
ENSG00000029725 RABEP1 rabaptin, RAB GTPase binding effector protein 1 protein_coding Homo_sapiens

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