C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00020X_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000161929-ENSG00000029725 CGP 9606 17:5208961-5385812
GeneTranscriptPositionBiotype
ENSG00000108559 (NUP88)
nucleoporin 88kDa 		ENST00000225696 (NUP88-004) 5386102-5419466 protein_coding
ENST00000570937 (NUP88-007) 5391475-5399633 retained_intron
ENST00000572019 (NUP88-009) 5416553-5419676 processed_transcript
ENST00000572290 (NUP88-005) 5414100-5419661 nonsense_mediated_decay
ENST00000572809 (NUP88-006) 5408737-5418229 protein_coding
ENST00000573169 (NUP88-014) 5360963-5386208 processed_transcript
ENST00000573584 (NUP88-001) 5386026-5420160 protein_coding
ENST00000574087 (NUP88-011) 5386687-5387912 retained_intron
ENST00000574855 (NUP88-012) 5386104-5387132 retained_intron
ENST00000574867 (NUP88-002) 5388376-5419662 retained_intron
ENST00000575976 (NUP88-008) 5387544-5388250 retained_intron
ENST00000576708 (NUP88-010) 5361814-5388850 nonsense_mediated_decay
ENST00000576862 (NUP88-013) 5387084-5394979 retained_intron
ENSG00000161929 (SCIMP)
SLP adaptor and CSK interacting membrane protein 		ENST00000399600 (SCIMP-003) 5210150-5234860 protein_coding
ENST00000571800 (SCIMP-002) 5213012-5234823 protein_coding
ENST00000574081 (SCIMP-001) 5208961-5234860 protein_coding
ENST00000574297 (SCIMP-004) 5214656-5234860 protein_coding
ENSG00000261879 (RP11-333E1.1)
 ENST00000571689 (RP11-333E1.1-001) 5192104-5235643 antisense
ENST00000573772 (RP11-333E1.1-003) 5223371-5248069 antisense
ENST00000575601 (RP11-333E1.1-002) 5192084-5223643 antisense
ENSG00000263164 (RP11-333E1.2)
 ENST00000575056 (RP11-333E1.2-001) 5240508-5241543 lincRNA
ENSG00000263220 (RP11-420A6.2)
 ENST00000572792 (RP11-420A6.2-001) 5364315-5371626 antisense
CIL_00020X_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000057135-ENSMUSG00000020817 CGP 10090 11:70790932-70943105
GeneTranscriptPositionBiotype
ENSMUSG00000020817 (Rabep1)
rabaptin, RAB GTPase binding effector protein 1 		ENSMUST00000076270 (Rabep1-001) 70844778-70943105 protein_coding
ENSMUST00000081362 (Rabep1-002) 70844975-70940483 protein_coding
ENSMUST00000100928 (Rabep1-003) 70844799-70941298 protein_coding
ENSMUST00000108533 (Rabep1-008) 70844942-70940646 protein_coding
ENSMUST00000142220 (Rabep1-005) 70844782-70941303 retained_intron
ENSMUST00000177731 (Rabep1-004) 70844925-70940940 protein_coding
ENSMUST00000178245 (Rabep1-007) 70844975-70940483 protein_coding
ENSMUST00000179114 (Rabep1-006) 70844792-70894121 protein_coding
ENSMUSG00000040667 (Nup88)
nucleoporin 88 		ENSMUST00000035283 (Nup88-003) 70943082-70969962 protein_coding
ENSMUST00000108530 (Nup88-002) 70943102-70969954 protein_coding
ENSMUST00000108531 (Nup88-001) 70943072-70969973 protein_coding
ENSMUST00000123192 (Nup88-006) 70943077-70946362 retained_intron
ENSMUST00000123917 (Nup88-010) 70944413-70945034 retained_intron
ENSMUST00000128193 (Nup88-012) 70943938-70944488 retained_intron
ENSMUST00000129615 (Nup88-005) 70944683-70948815 retained_intron
ENSMUST00000133188 (Nup88-011) 70943980-70944737 retained_intron
ENSMUST00000138634 (Nup88-007) 70949565-70969961 retained_intron
ENSMUST00000141179 (Nup88-009) 70943879-70945100 retained_intron
ENSMUST00000145336 (Nup88-008) 70956200-70961791 retained_intron
ENSMUST00000148168 (Nup88-004) 70943058-70969959 retained_intron
ENSMUST00000178253 (Nup88-014) 70943176-70969880 nonsense_mediated_decay
ENSMUST00000178369 (Nup88-015) 70954461-70956462 retained_intron
ENSMUST00000180225 (Nup88-013) 70955159-70956913 retained_intron
ENSMUSG00000057135 (Scimp)
SLP adaptor and CSK interacting membrane protein 		ENSMUST00000074572 (Scimp-002) 70791364-70812559 protein_coding
ENSMUST00000108534 (Scimp-001) 70790932-70812586 protein_coding
ENSMUSG00000081968 (Rpl23a-ps2)
ribosomal protein L23A, pseudogene 2 		ENSMUST00000119375 (Rpl23a-ps2-001) 70879428-70879901 processed_pseudogene
ENSMUSG00000084139 (Gm12322)
predicted gene 12322 		ENSMUST00000121605 (Gm12322-001) 70909257-70909645 processed_pseudogene
ENSMUSG00000093858 (Gm19967)
predicted gene, 19967 		ENSMUST00000179676 (Gm19967-001) 70864660-70872754 sense_intronic

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00020X_0001ENSG00000108559ENST00000225696ENST00000570937ENST00000572019ENST00000572290ENST00000572809ENST00000573169ENST00000573584ENST00000574087ENST00000574855ENST00000574867ENST00000575976ENST00000576708ENST00000576862ENSG00000161929ENST00000399600ENST00000571800ENST00000574081ENST00000574297ENSG00000261879ENST00000571689ENST00000573772ENST00000575601ENSG00000263164ENST00000575056ENSG00000263220ENST00000572792CIL_00020X_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00020X_0001ENSG00000108559ENST00000225696ENSG00000161929ENST00000399600ENST00000571800ENST00000574081ENST00000574297ENSG00000261879ENST00000571689ENST00000575601ENSG00000263164ENST00000575056ENSG00000263220ENST00000572792CIL_00020X_0002ENSMUSG00000020817ENSMUST00000076270ENSMUST00000177731ENSMUST00000178245ENSMUST00000179114ENSMUSG00000040667ENSMUST00000035283ENSMUST00000108530ENSMUST00000108531ENSMUST00000138634ENSMUSG00000057135ENSMUST00000074572ENSMUST00000108534ENSMUSG00000081968ENSMUST00000119375ENSMUSG00000084139ENSMUST00000121605ENSMUSG00000093858ENSMUST00000179676
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000108559 ENST00000225696 N/A N/A N/A N/A N/A N/A N/A N/A 9.781±0.00 N/A 31.934±0.00 N/A N/A 57.743±11.77
ENST00000570937 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572290 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572809 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573169 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573584 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574087 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574855 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574867 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575976 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576708 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576862 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000161929 ENST00000399600 0.455±0.00 N/A 0.625±0.00 N/A N/A 0.491±0.00 0.158±0.00 1.318±0.00 0.493±0.00 1.591±0.54 0.167±0.00 N/A N/A N/A
ENST00000571800 N/A N/A N/A 0.470±0.00 0.522±0.00 0.182±0.04 0.187±0.00 0.397±0.00 0.420±0.00 0.552±0.00 N/A 0.317±0.00 0.439±0.00 0.551±0.10
ENST00000574081 0.306±0.00 9.355±0.00 N/A N/A 1.101±0.00 0.172±0.04 0.109±0.08 N/A 0.641±0.40 0.952±0.00 N/A 0.378±0.13 0.729±0.00 N/A
ENST00000574297 N/A N/A N/A 0.762±0.00 N/A N/A 0.216±0.00 2.051±0.00 N/A N/A N/A N/A 1.575±0.00 N/A
ENSG00000261879 ENST00000571689 N/A N/A 0.226±0.00 0.490±0.00 0.428±0.00 0.223±0.00 0.110±0.06 N/A 0.226±0.00 0.567±0.11 0.054±0.03 0.606±0.00 N/A 1.041±0.09
ENST00000573772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575601 N/A N/A N/A 0.918±0.00 N/A 0.747±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000263164 ENST00000575056 0.193±0.00 5.175±0.00 N/A 2.787±0.00 0.632±0.47 0.735±0.00 0.232±0.00 0.871±0.00 0.142±0.00 1.027±0.00 0.754±0.00 2.357±1.11 N/A 1.708±1.24
ENSG00000263220 ENST00000572792 0.092±0.00 0.612±0.00 0.703±0.00 0.103±0.00 0.233±0.22 0.015±0.00 0.101±0.00 0.135±0.00 0.074±0.00 0.416±0.00 0.055±0.00 0.140±0.09 N/A 0.429±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020817 ENSMUST00000076270 5.491±0.00 N/A 6.494±0.38 16.160±4.19 4.564±1.15 2.915±0.33 3.654±0.41 3.214±1.14 3.534±0.80 3.717±0.30 5.641±1.20 8.520±4.12 7.848±1.17 N/A
ENSMUST00000081362 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000100928 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000108533 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142220 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177731 N/A N/A N/A 18.179±0.00 N/A N/A N/A N/A N/A N/A N/A 19.573±0.00 13.774±1.18 13.351±0.00
ENSMUST00000178245 N/A N/A N/A 23.675±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 10.003±0.43 12.297±0.00
ENSMUST00000179114 N/A 131.575±111.16 N/A N/A 21.270±4.51 N/A N/A N/A N/A N/A N/A 15.385±4.79 N/A N/A
ENSMUSG00000040667 ENSMUST00000035283 N/A N/A N/A N/A 7.831±2.60 3.745±0.12 N/A 3.597±0.08 3.345±1.01 N/A N/A 6.693±2.23 N/A N/A
ENSMUST00000108530 12.400±3.07 26.382±8.26 23.645±2.11 31.626±3.61 12.724±3.36 13.772±2.58 11.642±1.22 10.837±0.63 14.256±8.40 13.717±1.46 10.008±1.82 19.240±7.72 25.265±6.36 35.940±9.43
ENSMUST00000108531 4.934±0.42 N/A 9.665±0.80 16.980±0.00 N/A N/A 2.433±0.00 2.499±0.00 7.224±3.27 5.304±0.74 4.433±0.30 7.040±0.75 7.411±0.80 N/A
ENSMUST00000123192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000123917 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128193 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129615 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.965±0.00 17.120±0.00
ENSMUST00000141179 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145336 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148168 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000178253 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000178369 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000180225 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000057135 ENSMUST00000074572 N/A N/A N/A N/A N/A N/A N/A N/A 0.031±0.00 N/A 0.078±0.00 0.222±0.00 0.153±0.03 N/A
ENSMUST00000108534 0.647±0.36 1.029±0.16 0.479±0.15 0.015±0.00 2.757±0.55 0.532±0.23 0.231±0.17 0.906±0.25 0.607±0.39 1.747±0.36 0.274±0.00 0.540±0.27 0.111±0.05 0.071±0.04
ENSMUSG00000081968 ENSMUST00000119375 N/A 0.268±0.01 0.092±0.01 0.120±0.05 0.162±0.00 N/A 0.106±0.00 0.168±0.05 0.113±0.08 N/A N/A 0.396±0.05 0.201±0.10 N/A
ENSMUSG00000084139 ENSMUST00000121605 0.271±0.13 0.731±0.37 0.506±0.11 0.296±0.00 N/A N/A 0.228±0.12 0.396±0.19 0.344±0.12 0.173±0.00 N/A 0.909±0.33 0.474±0.16 0.147±0.01
ENSMUSG00000093858 ENSMUST00000179676 0.064±0.00 0.204±0.08 0.126±0.03 0.189±0.11 0.100±0.04 0.075±0.00 0.023±0.01 0.080±0.02 0.107±0.04 0.048±0.01 0.011±0.00 0.168±0.14 0.118±0.14 0.045±0.01

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