C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Region Summary |
| CIL_00060J_0001 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSDARG00000059600-ENSDARG00000003235 | CGP | 7955 | 5:60728343-60810130  |
|
| Gene | Transcript | Position | Biotype | |
ENSDARG00000003235  (nup88)nucleoporin 88 |
ENSDART00000023123 (nup88-001)
|
60787863-60810130 | protein_coding | |
|
ENSDARG00000059600 (rabep1) rabaptin, RAB GTPase binding effector protein 1 |
ENSDART00000110182 (rabep1-001)
|
60728343-60777851 | protein_coding | |
| CIL_00060J_0002 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSG00000029725-ENSG00000108559 | CGP | 9606 | 17:5282265-5420160 |
|
| Gene | Transcript | Position | Biotype | |
|
ENSG00000108559 (NUP88) nucleoporin 88kDa |
ENST00000225696 (NUP88-004)
|
5386102-5419466 | protein_coding | |
|
ENST00000570937 (NUP88-007)
|
5391475-5399633 | retained_intron | ||
|
ENST00000572019 (NUP88-009)
|
5416553-5419676 | processed_transcript | ||
|
ENST00000572290 (NUP88-005)
|
5414100-5419661 | nonsense_mediated_decay | ||
|
ENST00000572809 (NUP88-006)
|
5408737-5418229 | protein_coding | ||
|
ENST00000573169 (NUP88-014)
|
5360963-5386208 | processed_transcript | ||
|
ENST00000573584 (NUP88-001)
|
5386026-5420160 | protein_coding | ||
|
ENST00000574087 (NUP88-011)
|
5386687-5387912 | retained_intron | ||
|
ENST00000574855 (NUP88-012)
|
5386104-5387132 | retained_intron | ||
|
ENST00000574867 (NUP88-002)
|
5388376-5419662 | retained_intron | ||
|
ENST00000575976 (NUP88-008)
|
5387544-5388250 | retained_intron | ||
|
ENST00000576708 (NUP88-010)
|
5361814-5388850 | nonsense_mediated_decay | ||
|
ENST00000576862 (NUP88-013)
|
5387084-5394979 | retained_intron | ||
|
ENSG00000263220 (RP11-420A6.2) |
ENST00000572792 (RP11-420A6.2-001)
|
5364315-5371626 | antisense | |
| CIL_00060J_0003 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSMUSG00000020817-ENSMUSG00000040667 | CGP | 10090 | 11:70844778-70969973 |
|
| Gene | Transcript | Position | Biotype | |
|
ENSMUSG00000020817 (Rabep1) rabaptin, RAB GTPase binding effector protein 1 |
ENSMUST00000076270 (Rabep1-001)
|
70844778-70943105 | protein_coding | |
|
ENSMUST00000081362 (Rabep1-002)
|
70844975-70940483 | protein_coding | ||
|
ENSMUST00000100928 (Rabep1-003)
|
70844799-70941298 | protein_coding | ||
|
ENSMUST00000108533 (Rabep1-008)
|
70844942-70940646 | protein_coding | ||
|
ENSMUST00000142220 (Rabep1-005)
|
70844782-70941303 | retained_intron | ||
|
ENSMUST00000177731 (Rabep1-004)
|
70844925-70940940 | protein_coding | ||
|
ENSMUST00000178245 (Rabep1-007)
|
70844975-70940483 | protein_coding | ||
|
ENSMUST00000179114 (Rabep1-006)
|
70844792-70894121 | protein_coding | ||
|
ENSMUSG00000040667 (Nup88) nucleoporin 88 |
ENSMUST00000035283 (Nup88-003)
|
70943082-70969962 | protein_coding | |
|
ENSMUST00000108530 (Nup88-002)
|
70943102-70969954 | protein_coding | ||
|
ENSMUST00000108531 (Nup88-001)
|
70943072-70969973 | protein_coding | ||
|
ENSMUST00000123192 (Nup88-006)
|
70943077-70946362 | retained_intron | ||
|
ENSMUST00000123917 (Nup88-010)
|
70944413-70945034 | retained_intron | ||
|
ENSMUST00000128193 (Nup88-012)
|
70943938-70944488 | retained_intron | ||
|
ENSMUST00000129615 (Nup88-005)
|
70944683-70948815 | retained_intron | ||
|
ENSMUST00000133188 (Nup88-011)
|
70943980-70944737 | retained_intron | ||
|
ENSMUST00000138634 (Nup88-007)
|
70949565-70969961 | retained_intron | ||
|
ENSMUST00000141179 (Nup88-009)
|
70943879-70945100 | retained_intron | ||
|
ENSMUST00000145336 (Nup88-008)
|
70956200-70961791 | retained_intron | ||
|
ENSMUST00000148168 (Nup88-004)
|
70943058-70969959 | retained_intron | ||
|
ENSMUST00000178253 (Nup88-014)
|
70943176-70969880 | nonsense_mediated_decay | ||
|
ENSMUST00000178369 (Nup88-015)
|
70954461-70956462 | retained_intron | ||
|
ENSMUST00000180225 (Nup88-013)
|
70955159-70956913 | retained_intron | ||
|
ENSMUSG00000081968 (Rpl23a-ps2) ribosomal protein L23A, pseudogene 2 |
ENSMUST00000119375 (Rpl23a-ps2-001)
|
70879428-70879901 | processed_pseudogene | |
|
ENSMUSG00000084139 (Gm12322) predicted gene 12322 |
ENSMUST00000121605 (Gm12322-001)
|
70909257-70909645 | processed_pseudogene | |
|
ENSMUSG00000093858 (Gm19967) predicted gene, 19967 |
ENSMUST00000179676 (Gm19967-001)
|
70864660-70872754 | sense_intronic | |
Expression Patterns
|
