C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATP-binding cassette, sub-family F (GCN20), member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000033050 ABCF2 9606 - 7:151207837-151227230 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000222388 ABCF2-003 151207837-151227166 protein_coding
  ENST00000287844 ABCF2-001 151212490-151227230 protein_coding
  ENST00000441774 ABCF2-004 151223680-151227035 protein_coding
  ENST00000468073 ABCF2-006 151221636-151226626 protein_coding
  ENST00000473874 ABCF2-007 151218160-151221984 processed_transcript
  ENST00000477252 ABCF2-005 151226473-151226958 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000222388ENST00000287844ENST00000468073ENST00000473874
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000222388 N/A 6.427±0.00 0.576±0.00 2.509±0.00 4.020±0.00 2.810±0.00 1.906±0.31 1.221±0.00 2.822±0.00 2.143±0.39 13.638±5.83 4.933±0.57 6.683±3.80 9.006±4.90
ENST00000287844 6.422±0.00 5.555±0.00 0.821±0.00 8.380±3.68 3.415±2.63 3.201±2.07 5.174±3.38 6.435±6.08 1.921±0.29 3.932±0.00 10.893±9.89 7.618±3.48 8.194±2.26 8.639±1.77
ENST00000468073 N/A N/A 1.658±0.00 N/A N/A N/A N/A N/A N/A 2.096±0.00 N/A N/A N/A N/A
ENST00000473874 N/A N/A N/A N/A N/A N/A N/A 1.319±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0001 VISTA 7:150668461-151272977
CIL_0007RX CIL_0007RX_0001 VISTA 7:151109813-151711422
CIL_0004EM CIL_0004EM_0001 CGP 7:151190873-151227230
CIL_0000KE CIL_0000KE_0002 CGP 7:151207837-151238827

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 TAS transporter activity
GO:0005524 IEA ATP binding
GO:0005739 IEA mitochondrion
GO:0005740 TAS mitochondrial envelope
GO:0006200 IEA ATP catabolic process
GO:0006810 TAS transport
GO:0016020 IDA membrane
GO:0016887 IEA ATPase activity
GO:0043190 TAS ATP-binding cassette (ABC) transporter complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038785 abcf2a ATP-binding cassette, sub-family F (GCN20), member 2a protein_coding Danio_rerio
ENSDARG00000052331 BX322787.1 ATP-binding cassette, sub-family F, member 2-like (LOC100000576), mRNA protein_coding Danio_rerio
ENSMUSG00000028953 Abcf2 ATP-binding cassette, sub-family F (GCN20), member 2 protein_coding Mus_musculus

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