C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family F (GCN20), member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000222388 ABCF2-003 ENSG00000033050 9606 - 7:151207837-151227166 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000222388
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000222388 6.427±0.00 0.576±0.00 2.509±0.00 4.020±0.00 2.810±0.00 1.906±0.31 1.221±0.00 2.822±0.00 2.143±0.39 13.638±5.83 4.933±0.57 6.683±3.80 9.006±4.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0001 VISTA 7:150668461-151272977
CIL_0007RX CIL_0007RX_0001 VISTA 7:151109813-151711422
CIL_0004EM CIL_0004EM_0001 CGP 7:151190873-151227230
CIL_0000KE CIL_0000KE_0002 CGP 7:151207837-151238827

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 TAS transporter activity
GO:0005524 IEA ATP binding
GO:0005739 IEA mitochondrion
GO:0005740 TAS mitochondrial envelope
GO:0006200 IEA ATP catabolic process
GO:0006810 TAS transport
GO:0016020 IDA membrane
GO:0016887 IEA ATPase activity
GO:0043190 TAS ATP-binding cassette (ABC) transporter complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030795 Abcf2-201 protein_coding Mus_musculus 0 2593
ENSMUST00000119074 Gm16481-001 processed_pseudogene Mus_musculus 0 460
ENSMUST00000105106 Hist1h2bf-001 protein_coding Mus_musculus 0 228
ENSMUST00000091709 Hist1h2bn-001 protein_coding Mus_musculus 0 222
ENSMUST00000051091 Hist1h2be-001 protein_coding Mus_musculus 0 222
ENSMUST00000091704 Hist1h2be-002 protein_coding Mus_musculus 0 222
ENSMUST00000102982 Hist1h2bp-001 protein_coding Mus_musculus 0 217
ENSMUST00000110469 Hist1h2bq-001 protein_coding Mus_musculus 0 213
ENSMUST00000078156 Hist1h2bh-001 protein_coding Mus_musculus 0 211
ENSMUST00000110473 Hist1h2bp-002 protein_coding Mus_musculus 0 209
ENSMUST00000117835 Gm12957-001 processed_pseudogene Mus_musculus 8.00001e-42 176

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