C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family F (GCN20), member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000287844 ABCF2-001 ENSG00000033050 9606 - 7:151212490-151227230 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000287844
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000287844 6.422±0.00 5.555±0.00 0.821±0.00 8.380±3.68 3.415±2.63 3.201±2.07 5.174±3.38 6.435±6.08 1.921±0.29 3.932±0.00 10.893±9.89 7.618±3.48 8.194±2.26 8.639±1.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0001 VISTA 7:150668461-151272977
CIL_0007RX CIL_0007RX_0001 VISTA 7:151109813-151711422
CIL_0004EM CIL_0004EM_0001 CGP 7:151190873-151227230
CIL_0000KE CIL_0000KE_0002 CGP 7:151207837-151238827

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 TAS transporter activity
GO:0005524 IEA ATP binding
GO:0005740 TAS mitochondrial envelope
GO:0006200 IEA ATP catabolic process
GO:0006810 TAS transport
GO:0016020 IDA membrane
GO:0016887 IEA ATPase activity
GO:0043190 TAS ATP-binding cassette (ABC) transporter complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030795 Abcf2-201 protein_coding Mus_musculus 0 3033
ENSMUST00000119074 Gm16481-001 processed_pseudogene Mus_musculus 0 462

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