C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: amyloid beta (A4) precursor protein-binding, family A, member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000034053 APBA2 9606 + 15:28884483-29118315 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000382938 APBA2-006 29070658-29102759 retained_intron
  ENST00000411764 APBA2-201 28921637-29118311 protein_coding
  ENST00000558206 APBA2-010 28990419-29053966 protein_coding
  ENST00000558259 APBA2-202 28921637-29118311 protein_coding
  ENST00000558330 APBA2-002 28886022-29117717 protein_coding
  ENST00000558358 APBA2-011 29044324-29054675 protein_coding
  ENST00000558402 APBA2-001 28885974-29118315 protein_coding
  ENST00000558804 APBA2-008 28919367-29054094 protein_coding
  ENST00000559709 APBA2-007 28886163-29053897 protein_coding
  ENST00000559814 APBA2-003 28886160-29108620 retained_intron
  ENST00000560283 APBA2-009 28961304-29054220 protein_coding
  ENST00000561069 APBA2-004 28884483-29117717 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000382938ENST00000411764ENST00000558259ENST00000558330ENST00000558358ENST00000558402ENST00000559814ENST00000561069
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000382938 N/A N/A N/A N/A 0.228±0.16 N/A 0.044±0.00 0.161±0.00 N/A 0.235±0.00 0.058±0.00 0.298±0.00 N/A N/A
ENST00000411764 N/A 2.677±0.00 0.047±0.00 N/A 0.115±0.00 0.275±0.23 N/A 0.093±0.00 0.028±0.00 N/A 0.033±0.00 0.992±0.84 0.846±0.54 3.116±1.14
ENST00000558259 0.163±0.00 N/A N/A 16.246±2.01 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558330 N/A 2.588±0.00 N/A N/A N/A 0.082±0.00 0.040±0.00 N/A 0.257±0.00 0.535±0.00 N/A 0.592±0.14 0.733±0.43 1.421±0.32
ENST00000558358 N/A N/A 0.111±0.00 N/A N/A 0.323±0.00 N/A N/A N/A 0.645±0.00 N/A N/A N/A N/A
ENST00000558402 N/A N/A N/A N/A N/A N/A N/A 0.106±0.00 N/A N/A N/A N/A N/A N/A
ENST00000559814 N/A N/A N/A N/A N/A 0.234±0.00 N/A N/A N/A N/A N/A N/A 0.258±0.00 2.176±0.00
ENST00000561069 N/A N/A N/A N/A N/A N/A 0.043±0.00 N/A N/A N/A N/A N/A 0.391±0.13 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006HE CIL_0006HE_0001 CGP 15:28884483-29570723

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001540 IEA beta-amyloid binding
GO:0001701 IEA in utero embryonic development
GO:0005515 IPI:IEA protein binding
GO:0005886 IEA plasma membrane
GO:0007268 IEA synaptic transmission
GO:0007399 TAS nervous system development
GO:0007626 IEA locomotory behavior
GO:0010468 IEA regulation of gene expression
GO:0015031 IEA protein transport
GO:0035264 IEA multicellular organism growth

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060639 apba2b amyloid beta (A4) precursor protein-binding, family A, member 2b protein_coding Danio_rerio
ENSDARG00000063314 apba2a amyloid beta (A4) precursor protein-binding, family A, member 2a protein_coding Danio_rerio
ENSMUSG00000030519 Apba2 amyloid beta (A4) precursor protein-binding, family A, member 2 protein_coding Mus_musculus

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