C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006HE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000034053-ENSG00000104059 CGP 9606 15:28884483-29570723
GeneTranscriptPositionBiotype
ENSG00000034053 (APBA2)
amyloid beta (A4) precursor protein-binding, family A, member 2 		ENST00000382938 (APBA2-006) 29070658-29102759 retained_intron
ENST00000411764 (APBA2-201) 28921637-29118311 protein_coding
ENST00000558206 (APBA2-010) 28990419-29053966 protein_coding
ENST00000558259 (APBA2-202) 28921637-29118311 protein_coding
ENST00000558330 (APBA2-002) 28886022-29117717 protein_coding
ENST00000558358 (APBA2-011) 29044324-29054675 protein_coding
ENST00000558402 (APBA2-001) 28885974-29118315 protein_coding
ENST00000558804 (APBA2-008) 28919367-29054094 protein_coding
ENST00000559709 (APBA2-007) 28886163-29053897 protein_coding
ENST00000559814 (APBA2-003) 28886160-29108620 retained_intron
ENST00000560283 (APBA2-009) 28961304-29054220 protein_coding
ENST00000561069 (APBA2-004) 28884483-29117717 protein_coding
ENSG00000104059 (FAM189A1)
family with sequence similarity 189, member A1 		ENST00000261275 (FAM189A1-001) 29120254-29570723 protein_coding
ENST00000560021 (FAM189A1-004) 29123315-29196687 retained_intron
ENST00000560050 (FAM189A1-002) 29381771-29569985 processed_transcript
ENST00000560082 (FAM189A1-003) 29196430-29452799 protein_coding
ENSG00000185115 (NDNL2)
necdin-like 2 		ENST00000332303 (NDNL2-001) 29268149-29269829 protein_coding
ENSG00000252868 (snoZ278)
Small nucleolar RNA Z278 		ENST00000517059 (snoZ278.1-201) 29233868-29233979 snoRNA
ENSG00000259277 (RP13-126C7.1)
 ENST00000560531 (RP13-126C7.1-001) 28970196-28977464 antisense
ENSG00000259299 (RP11-37J13.1)
 ENST00000560524 (RP11-37J13.1-001) 29233673-29235137 processed_pseudogene
ENSG00000259690 (CTD-3118D7.1)
 ENST00000558671 (CTD-3118D7.1-001) 29373602-29376956 sense_intronic
CIL_0006HE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030519-ENSMUSG00000030518 CGP 10090 7:64501706-65156570
GeneTranscriptPositionBiotype
ENSMUSG00000030518 (Fam189a1)
family with sequence similarity 189, member A1 		ENSMUST00000119118 (Fam189a1-001) 64756113-65156570 protein_coding
ENSMUST00000133883 (Fam189a1-005) 64756113-64773652 processed_transcript
ENSMUST00000144535 (Fam189a1-004) 64819765-64856397 retained_intron
ENSMUST00000148459 (Fam189a1-002) 64786690-65156416 protein_coding
ENSMUST00000149851 (Fam189a1-003) 64767723-64925560 protein_coding
ENSMUSG00000030519 (Apba2)
amyloid beta (A4) precursor protein-binding, family A, member 2 		ENSMUST00000032732 (Apba2-001) 64501706-64753870 protein_coding
ENSMUST00000096173 (Apba2-003) 64743839-64753366 protein_coding
ENSMUST00000107507 (Apba2-002) 64635031-64753858 protein_coding
ENSMUST00000137732 (Apba2-005) 64502138-64695371 protein_coding
ENSMUST00000138829 (Apba2-004) 64501949-64695307 protein_coding
ENSMUSG00000070520 (Ndnl2)
necdin-like 2 		ENSMUST00000094331 (Ndnl2-001) 64867052-64872997 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006HE_0001ENSG00000034053ENST00000382938ENST00000411764ENST00000558206ENST00000558259ENST00000558330ENST00000558358ENST00000558402ENST00000558804ENST00000559709ENST00000559814ENST00000560283ENST00000561069ENSG00000104059ENST00000261275ENST00000560021ENST00000560050ENST00000560082ENSG00000185115ENST00000332303ENSG00000252868ENST00000517059ENSG00000259277ENST00000560531ENSG00000259299ENST00000560524ENSG00000259690ENST00000558671CIL_0006HE_0002ENSMUSG00000030518ENSMUST00000119118ENSMUST00000133883ENSMUST00000144535ENSMUST00000148459ENSMUST00000149851ENSMUSG00000030519ENSMUST00000032732ENSMUST00000096173ENSMUST00000107507ENSMUST00000137732ENSMUST00000138829ENSMUSG00000070520ENSMUST00000094331
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006HE_0001ENSG00000034053ENST00000382938ENST00000411764ENST00000558259ENST00000558330ENST00000558358ENST00000558402ENST00000559814ENST00000561069ENSG00000104059ENST00000261275ENST00000560021ENST00000560082ENSG00000185115ENST00000332303ENSG00000252868ENST00000517059ENSG00000259277ENST00000560531ENSG00000259299ENST00000560524ENSG00000259690ENST00000558671CIL_0006HE_0002ENSMUSG00000030518ENSMUST00000119118ENSMUST00000133883ENSMUST00000144535ENSMUST00000148459ENSMUST00000149851ENSMUSG00000030519ENSMUST00000032732ENSMUST00000096173ENSMUST00000107507ENSMUST00000137732ENSMUST00000138829ENSMUSG00000070520ENSMUST00000094331
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000034053 ENST00000382938 N/A N/A N/A N/A 0.228±0.16 N/A 0.044±0.00 0.161±0.00 N/A 0.235±0.00 0.058±0.00 0.298±0.00 N/A N/A
ENST00000411764 N/A 2.677±0.00 0.047±0.00 N/A 0.115±0.00 0.275±0.23 N/A 0.093±0.00 0.028±0.00 N/A 0.033±0.00 0.992±0.84 0.846±0.54 3.116±1.14
ENST00000558206 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558259 0.163±0.00 N/A N/A 16.246±2.01 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558330 N/A 2.588±0.00 N/A N/A N/A 0.082±0.00 0.040±0.00 N/A 0.257±0.00 0.535±0.00 N/A 0.592±0.14 0.733±0.43 1.421±0.32
ENST00000558358 N/A N/A 0.111±0.00 N/A N/A 0.323±0.00 N/A N/A N/A 0.645±0.00 N/A N/A N/A N/A
ENST00000558402 N/A N/A N/A N/A N/A N/A N/A 0.106±0.00 N/A N/A N/A N/A N/A N/A
ENST00000558804 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559709 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559814 N/A N/A N/A N/A N/A 0.234±0.00 N/A N/A N/A N/A N/A N/A 0.258±0.00 2.176±0.00
ENST00000560283 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561069 N/A N/A N/A N/A N/A N/A 0.043±0.00 N/A N/A N/A N/A N/A 0.391±0.13 N/A
ENSG00000104059 ENST00000261275 0.056±0.00 0.177±0.00 N/A 2.702±0.83 0.007±0.00 N/A N/A 0.897±0.00 0.042±0.00 0.498±0.00 N/A 0.098±0.06 0.031±0.01 0.720±0.00
ENST00000560021 N/A N/A 0.980±0.00 N/A 0.136±0.10 0.512±0.04 N/A N/A 0.179±0.16 0.658±0.00 N/A 0.151±0.03 0.204±0.00 N/A
ENST00000560050 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560082 N/A N/A N/A N/A N/A 0.525±0.00 N/A N/A N/A 0.947±0.00 N/A 0.529±0.03 N/A N/A
ENSG00000185115 ENST00000332303 7.423±0.00 12.115±0.00 2.049±0.00 6.970±1.52 5.074±3.52 4.134±2.92 4.142±2.32 6.977±5.25 5.084±0.72 5.096±2.28 3.843±2.22 12.103±6.85 13.519±2.92 20.508±0.69
ENSG00000252868 ENST00000517059 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.306±0.00 N/A N/A N/A
ENSG00000259277 ENST00000560531 0.071±0.00 N/A N/A 0.446±0.00 0.071±0.03 N/A N/A N/A 0.119±0.00 0.021±0.00 N/A 0.214±0.00 N/A 0.037±0.00
ENSG00000259299 ENST00000560524 0.008±0.00 N/A 0.544±0.00 0.045±0.00 N/A 0.193±0.19 0.007±0.00 N/A N/A 0.171±0.00 0.021±0.00 0.025±0.00 N/A 0.046±0.00
ENSG00000259690 ENST00000558671 N/A 0.005±0.00 0.161±0.00 0.059±0.04 0.020±0.00 0.100±0.09 0.010±0.00 0.003±0.00 0.413±0.00 0.295±0.00 N/A 0.011±0.00 N/A 0.065±0.06
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030518 ENSMUST00000119118 0.255±0.00 0.071±0.00 0.008±0.00 7.427±4.53 0.026±0.00 0.415±0.10 0.023±0.00 0.011±0.00 0.029±0.03 0.319±0.07 N/A 0.687±0.32 0.054±0.00 0.120±0.00
ENSMUST00000133883 0.007±0.00 0.210±0.04 N/A N/A 0.030±0.02 N/A 0.032±0.02 0.014±0.00 0.078±0.07 N/A 0.032±0.00 0.123±0.01 0.149±0.15 N/A
ENSMUST00000144535 N/A N/A N/A N/A 0.322±0.00 N/A N/A 0.100±0.00 N/A N/A N/A N/A 0.112±0.00 N/A
ENSMUST00000148459 N/A 0.260±0.00 N/A N/A N/A N/A N/A 0.039±0.01 0.098±0.00 0.480±0.10 N/A 1.181±0.27 N/A N/A
ENSMUST00000149851 N/A 0.442±0.11 0.055±0.00 N/A 0.117±0.09 2.918±0.47 0.208±0.12 0.061±0.03 0.025±0.00 0.636±0.00 N/A 1.642±0.57 0.030±0.00 0.288±0.14
ENSMUSG00000030519 ENSMUST00000032732 0.160±0.00 N/A 0.194±0.03 33.682±17.69 0.043±0.00 0.521±0.15 N/A N/A 0.086±0.00 0.138±0.00 N/A 0.248±0.03 0.007±0.00 0.068±0.01
ENSMUST00000096173 0.213±0.00 0.192±0.10 N/A N/A 0.046±0.00 0.605±0.00 0.153±0.00 0.059±0.02 0.088±0.05 N/A 0.075±0.01 N/A N/A 0.185±0.00
ENSMUST00000107507 0.040±0.02 0.129±0.07 0.590±0.00 10.401±2.42 0.054±0.02 0.488±0.04 0.124±0.05 0.049±0.02 0.041±0.03 0.239±0.00 0.017±0.00 0.990±0.35 0.044±0.04 0.136±0.16
ENSMUST00000137732 0.337±0.03 0.229±0.10 N/A N/A 0.167±0.04 1.002±0.25 0.412±0.21 0.157±0.05 N/A 0.653±0.01 0.226±0.00 2.369±0.85 0.117±0.04 N/A
ENSMUST00000138829 N/A 0.204±0.03 N/A N/A 0.124±0.02 0.649±0.00 N/A 0.092±0.02 N/A 0.332±0.00 N/A 0.668±0.01 N/A N/A
ENSMUSG00000070520 ENSMUST00000094331 2.944±0.98 11.603±2.18 2.634±0.25 2.664±0.73 3.751±2.30 6.055±0.70 1.089±0.32 2.463±0.72 3.065±1.13 4.090±1.17 0.856±0.06 9.287±4.51 1.810±0.45 2.017±0.79

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