C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: amyloid beta (A4) precursor protein-binding, family A, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000558402 APBA2-001 ENSG00000034053 9606 + 15:28885974-29118315 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyENST00000558402
Transcript ID Kidney
ENST00000558402 0.106±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006HE CIL_0006HE_0001 CGP 15:28884483-29570723

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001540 IEA beta-amyloid binding
GO:0001701 IEA in utero embryonic development
GO:0005515 IPI:IEA protein binding
GO:0005886 IEA plasma membrane
GO:0007268 IEA synaptic transmission
GO:0007399 TAS nervous system development
GO:0007626 IEA locomotory behavior
GO:0010468 IEA regulation of gene expression
GO:0015031 IEA protein transport
GO:0035264 IEA multicellular organism growth

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032732 Apba2-001 protein_coding Mus_musculus 0 2713
ENSMUST00000107507 Apba2-002 protein_coding Mus_musculus 0 1290
ENSDART00000085661 apba2b-201 protein_coding Danio_rerio 0 1147
ENSMUST00000025830 Apba1-201 protein_coding Mus_musculus 0 797
ENSDART00000006640 apba1a-201 protein_coding Danio_rerio 0 715
ENSDART00000137030 apba1a-001 protein_coding Danio_rerio 0 715
ENSDART00000092406 apba2a-201 protein_coding Danio_rerio 0 547
ENSDART00000153968 apba2a-001 protein_coding Danio_rerio 0 497
ENSMUST00000137732 Apba2-005 protein_coding Mus_musculus 0 387
ENSMUST00000138829 Apba2-004 protein_coding Mus_musculus 3e-39 169

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