C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 18 (vesicular monoamine transporter), member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000036565 SLC18A1 9606 - 8:20144855-20183206 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265808 SLC18A1-002 20144855-20183115 protein_coding
  ENST00000276373 SLC18A1-001 20144855-20183206 protein_coding
  ENST00000381608 SLC18A1-008 20145788-20180964 protein_coding
  ENST00000437980 SLC18A1-201 20144856-20183206 protein_coding
  ENST00000440926 SLC18A1-202 20144856-20183206 protein_coding
  ENST00000517776 SLC18A1-004 20144859-20183125 nonsense_mediated_decay
  ENST00000519026 SLC18A1-003 20145498-20183172 protein_coding
  ENST00000519171 SLC18A1-007 20147603-20150996 retained_intron
  ENST00000522513 SLC18A1-005 20171103-20183117 protein_coding
  ENST00000524272 SLC18A1-006 20171105-20175922 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000265808ENST00000276373ENST00000381608ENST00000519026ENST00000519171ENST00000522513ENST00000524272
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000265808 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.104±0.00
ENST00000276373 N/A N/A N/A N/A 0.054±0.00 N/A N/A N/A 0.062±0.00 0.019±0.00 N/A N/A
ENST00000381608 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.045±0.00
ENST00000519026 N/A N/A N/A N/A 0.073±0.00 N/A N/A N/A N/A N/A 0.031±0.00 0.067±0.00
ENST00000519171 N/A N/A N/A 0.418±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522513 N/A N/A N/A N/A 0.425±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000524272 0.028±0.00 0.192±0.00 0.252±0.01 0.067±0.00 N/A 0.013±0.00 0.173±0.09 0.060±0.00 0.023±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003TS CIL_0003TS_0001 CGP 8:19901717-20183206
CIL_0003TP CIL_0003TP_0001 CGP 8:20144855-20226819

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0006836 IEA neurotransmitter transport
GO:0006855 IEA drug transmembrane transport
GO:0008504 TAS monoamine transmembrane transporter activity
GO:0015238 IEA drug transmembrane transporter activity
GO:0015844 TAS monoamine transport
GO:0015893 IEA drug transport
GO:0016021 IEA integral component of membrane
GO:0055085 TAS:IEA transmembrane transport
GO:0070083 TAS clathrin-sculpted monoamine transport vesicle membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078157 SLC18A1 solute carrier family 18 (vesicular monoamine transporter), member 1 protein_coding Danio_rerio
ENSMUSG00000036330 Slc18a1 solute carrier family 18 (vesicular monoamine), member 1 protein_coding Mus_musculus

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