C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003TS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000175445-ENSG00000036565 CGP 9606 8:19901717-20183206
GeneTranscriptPositionBiotype
ENSG00000036565 (SLC18A1)
solute carrier family 18 (vesicular monoamine transporter), member 1 		ENST00000265808 (SLC18A1-002) 20144855-20183115 protein_coding
ENST00000276373 (SLC18A1-001) 20144855-20183206 protein_coding
ENST00000381608 (SLC18A1-008) 20145788-20180964 protein_coding
ENST00000437980 (SLC18A1-201) 20144856-20183206 protein_coding
ENST00000440926 (SLC18A1-202) 20144856-20183206 protein_coding
ENST00000517776 (SLC18A1-004) 20144859-20183125 nonsense_mediated_decay
ENST00000519026 (SLC18A1-003) 20145498-20183172 protein_coding
ENST00000519171 (SLC18A1-007) 20147603-20150996 retained_intron
ENST00000522513 (SLC18A1-005) 20171103-20183117 protein_coding
ENST00000524272 (SLC18A1-006) 20171105-20175922 processed_transcript
ENSG00000175445 (LPL)
lipoprotein lipase 		ENST00000311322 (LPL-001) 19938971-19967258 protein_coding
ENST00000519773 (LPL-007) 19939256-19948303 nonsense_mediated_decay
ENST00000520959 (LPL-006) 19901717-19954151 protein_coding
ENST00000521994 (LPL-005) 19939256-19951828 processed_transcript
ENST00000522701 (LPL-004) 19938933-19951836 protein_coding
ENST00000523696 (LPL-008) 19939372-19948485 retained_intron
ENST00000524029 (LPL-003) 19938870-19951908 protein_coding
ENSG00000242709 (RPL30P9)
ribosomal protein L30 pseudogene 9 		ENST00000465586 (RPL30P9-001) 20113343-20113672 processed_pseudogene
ENSG00000253775 (AC100802.3)
 ENST00000519197 (AC100802.3-001) 20079305-20118442 antisense
CIL_0003TS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000015568-ENSMUSG00000036330 CGP 10090 8:68880491-69089235
GeneTranscriptPositionBiotype
ENSMUSG00000006273 (Atp6v1b2)
ATPase, H+ transporting, lysosomal V1 subunit B2 		ENSMUST00000006435 (Atp6v1b2-001) 69088646-69113711 protein_coding
ENSMUST00000123290 (Atp6v1b2-007) 69102213-69103063 retained_intron
ENSMUST00000125211 (Atp6v1b2-005) 69088789-69096586 retained_intron
ENSMUST00000129797 (Atp6v1b2-006) 69103128-69108340 retained_intron
ENSMUST00000153079 (Atp6v1b2-003) 69088768-69107363 retained_intron
ENSMUST00000153680 (Atp6v1b2-004) 69088787-69102249 retained_intron
ENSMUSG00000015568 (Lpl)
lipoprotein lipase 		ENSMUST00000015712 (Lpl-001) 68880491-68906934 protein_coding
ENSMUST00000101463 (Lpl-003) 68880657-68889681 retained_intron
ENSMUST00000168401 (Lpl-002) 68880555-68907448 nonsense_mediated_decay
ENSMUST00000169749 (Lpl-004) 68890744-68895819 processed_transcript
ENSMUSG00000036330 (Slc18a1)
solute carrier family 18 (vesicular monoamine), member 1 		ENSMUST00000037478 (Slc18a1-001) 69037711-69089222 protein_coding
ENSMUST00000142548 (Slc18a1-002) 69065110-69077228 retained_intron
ENSMUST00000142710 (Slc18a1-005) 69075169-69089209 processed_transcript
ENSMUST00000147674 (Slc18a1-003) 69070255-69075508 retained_intron
ENSMUST00000148856 (Slc18a1-004) 69075101-69089235 processed_transcript
ENSMUSG00000089995 (Gm15716)
predicted gene 15716 		ENSMUST00000162457 (Gm15716-001) 69044956-69063422 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003TS_0001ENSG00000036565ENST00000265808ENST00000276373ENST00000381608ENST00000437980ENST00000440926ENST00000517776ENST00000519026ENST00000519171ENST00000522513ENST00000524272ENSG00000175445ENST00000311322ENST00000519773ENST00000520959ENST00000521994ENST00000522701ENST00000523696ENST00000524029ENSG00000242709ENST00000465586ENSG00000253775ENST00000519197CIL_0003TS_0002ENSMUSG00000006273ENSMUST00000006435ENSMUST00000123290ENSMUST00000125211ENSMUST00000129797ENSMUST00000153079ENSMUST00000153680ENSMUSG00000015568ENSMUST00000015712ENSMUST00000101463ENSMUST00000168401ENSMUST00000169749ENSMUSG00000036330ENSMUST00000037478ENSMUST00000142548ENSMUST00000142710ENSMUST00000147674ENSMUST00000148856ENSMUSG00000089995ENSMUST00000162457
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003TS_0001ENSG00000036565ENST00000265808ENST00000276373ENST00000381608ENST00000519026ENST00000519171ENST00000522513ENST00000524272ENSG00000175445ENST00000311322ENST00000520959ENST00000522701ENSG00000242709ENST00000465586ENSG00000253775ENST00000519197CIL_0003TS_0002ENSMUSG00000006273ENSMUST00000006435ENSMUST00000129797ENSMUST00000153680ENSMUSG00000015568ENSMUST00000015712ENSMUST00000101463ENSMUST00000168401ENSMUSG00000036330ENSMUST00000037478ENSMUST00000142548ENSMUST00000142710ENSMUST00000147674ENSMUST00000148856ENSMUSG00000089995ENSMUST00000162457
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000036565 ENST00000265808 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.104±0.00
ENST00000276373 N/A N/A N/A N/A N/A 0.054±0.00 N/A N/A N/A 0.062±0.00 N/A 0.019±0.00 N/A N/A
ENST00000381608 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.045±0.00
ENST00000437980 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440926 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517776 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519026 N/A N/A N/A N/A N/A 0.073±0.00 N/A N/A N/A N/A N/A N/A 0.031±0.00 0.067±0.00
ENST00000519171 N/A N/A N/A N/A 0.418±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522513 N/A N/A N/A N/A N/A 0.425±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524272 0.028±0.00 0.192±0.00 N/A 0.252±0.01 0.067±0.00 N/A 0.013±0.00 0.173±0.09 0.060±0.00 0.023±0.00 N/A N/A N/A N/A
ENSG00000175445 ENST00000311322 N/A N/A N/A 0.694±0.00 N/A N/A 60.754±20.54 N/A 23.180±0.00 22.265±0.00 N/A 0.941±0.00 4.000±0.00 0.091±0.00
ENST00000519773 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520959 N/A N/A N/A N/A N/A N/A N/A 1.143±0.00 N/A N/A N/A N/A N/A N/A
ENST00000521994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522701 N/A N/A N/A 2.961±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000242709 ENST00000465586 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.066±0.00
ENSG00000253775 ENST00000519197 0.159±0.00 N/A N/A 0.102±0.00 0.145±0.00 0.023±0.00 0.113±0.00 N/A N/A N/A N/A N/A 0.923±0.31 0.301±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000006273 ENSMUST00000006435 43.720±7.19 23.851±1.21 24.807±2.25 74.268±19.97 31.378±4.87 18.743±3.22 24.043±0.27 122.062±12.92 23.157±9.61 42.677±2.71 16.369±1.43 31.100±5.79 56.129±26.98 11.567±4.36
ENSMUST00000123290 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129797 N/A N/A N/A N/A N/A 18.340±2.84 N/A N/A N/A N/A N/A 25.723±2.69 N/A N/A
ENSMUST00000153079 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153680 N/A 32.434±1.28 N/A N/A N/A 17.537±0.17 N/A N/A N/A N/A N/A 38.203±0.00 N/A N/A
ENSMUSG00000015568 ENSMUST00000015712 680.913±438.74 33.293±9.80 20.800±3.22 2.118±1.11 213.649±21.93 4.317±1.27 434.204±27.19 54.902±11.38 27.550±41.50 30.006±1.83 113.712±26.00 28.091±28.19 6.550±3.62 1.216±0.73
ENSMUST00000101463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.486±0.00
ENSMUST00000168401 1599.247±1108.75 142.821±48.95 8.529±0.00 14.154±0.00 434.160±66.76 13.707±2.76 374.572±79.05 49.005±21.49 4.084±3.05 29.768±8.93 N/A 77.435±15.27 5.066±3.08 2.309±1.48
ENSMUST00000169749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000036330 ENSMUST00000037478 0.296±0.07 11.132±3.60 0.348±0.04 0.078±0.05 0.399±0.22 1.850±0.96 0.084±0.00 67.325±6.02 0.986±0.53 0.962±0.28 0.077±0.03 0.301±0.15 1.894±1.57 0.270±0.20
ENSMUST00000142548 N/A N/A N/A N/A N/A 0.496±0.00 N/A N/A N/A N/A 0.047±0.00 0.250±0.18 N/A N/A
ENSMUST00000142710 N/A N/A N/A 0.159±0.00 N/A N/A 0.277±0.00 N/A N/A N/A 0.262±0.00 0.836±0.17 N/A N/A
ENSMUST00000147674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.092±0.00
ENSMUST00000148856 N/A N/A N/A 0.074±0.00 N/A N/A N/A N/A N/A N/A N/A 0.137±0.00 N/A N/A
ENSMUSG00000089995 ENSMUST00000162457 0.364±0.17 1.078±0.32 0.245±0.09 1.806±1.75 0.678±0.08 0.599±0.00 0.179±0.02 0.521±0.28 0.800±0.53 1.338±0.60 0.088±0.00 1.863±1.28 0.155±0.11 2.823±2.59

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