C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 18 (vesicular monoamine), member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036330 Slc18a1 10090 - 8:69037711-69089235 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000037478 Slc18a1-001 69037711-69089222 protein_coding
  ENSMUST00000142548 Slc18a1-002 69065110-69077228 retained_intron
  ENSMUST00000142710 Slc18a1-005 69075169-69089209 processed_transcript
  ENSMUST00000147674 Slc18a1-003 69070255-69075508 retained_intron
  ENSMUST00000148856 Slc18a1-004 69075101-69089235 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037478ENSMUST00000142548ENSMUST00000142710ENSMUST00000147674ENSMUST00000148856
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037478 0.296±0.07 11.132±3.60 0.348±0.04 0.078±0.05 0.399±0.22 1.850±0.96 0.084±0.00 67.325±6.02 0.986±0.53 0.962±0.28 0.077±0.03 0.301±0.15 1.894±1.57 0.270±0.20
ENSMUST00000142548 N/A N/A N/A N/A N/A 0.496±0.00 N/A N/A N/A N/A 0.047±0.00 0.250±0.18 N/A N/A
ENSMUST00000142710 N/A N/A N/A 0.159±0.00 N/A N/A 0.277±0.00 N/A N/A N/A 0.262±0.00 0.836±0.17 N/A N/A
ENSMUST00000147674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.092±0.00
ENSMUST00000148856 N/A N/A N/A 0.074±0.00 N/A N/A N/A N/A N/A N/A N/A 0.137±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003TS CIL_0003TS_0002 CGP 8:68880491-69089235
CIL_0003TP CIL_0003TP_0002 CGP 8:69037711-69113711

Gene Ontology
GO IDEvidence TypeGO Description
GO:0006836 IEA neurotransmitter transport
GO:0006855 IEA drug transmembrane transport
GO:0015238 IEA drug transmembrane transporter activity
GO:0016021 IEA integral component of membrane
GO:0031410 IEA cytoplasmic vesicle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078157 SLC18A1 solute carrier family 18 (vesicular monoamine transporter), member 1 protein_coding Danio_rerio
ENSG00000036565 SLC18A1 solute carrier family 18 (vesicular monoamine transporter), member 1 protein_coding Homo_sapiens

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