C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: NOP2/Sun RNA methyltransferase family, member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000037474 NSUN2 9606 - 5:6599239-6633291 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264670 NSUN2-001 6599239-6633291 protein_coding
  ENST00000502932 NSUN2-009 6603869-6604708 retained_intron
  ENST00000504374 NSUN2-005 6599240-6633291 nonsense_mediated_decay
  ENST00000505264 NSUN2-007 6620116-6625638 processed_transcript
  ENST00000505892 NSUN2-003 6599241-6621489 retained_intron
  ENST00000506139 NSUN2-004 6599569-6633042 protein_coding
  ENST00000507888 NSUN2-008 6604801-6606926 retained_intron
  ENST00000513888 NSUN2-002 6599400-6604882 retained_intron
  ENST00000514127 NSUN2-006 6600030-6607257 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264670ENST00000504374ENST00000505892ENST00000506139ENST00000513888
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264670 3.295±0.00 6.409±0.00 1.142±0.00 3.164±0.24 4.438±0.50 1.939±0.00 6.535±0.00 4.274±2.18 5.424±1.97 1.353±0.00 3.814±2.26 8.608±1.41 8.569±1.15 7.311±0.00
ENST00000504374 N/A N/A 0.513±0.00 2.061±0.00 N/A 1.120±0.00 2.099±0.00 N/A N/A N/A N/A 22.606±0.00 7.872±0.00 13.249±0.00
ENST00000505892 N/A N/A 0.430±0.00 N/A N/A 1.563±0.00 0.492±0.00 1.288±0.00 0.741±0.00 1.782±0.00 N/A N/A N/A N/A
ENST00000506139 4.924±0.00 7.991±0.00 N/A N/A 3.875±0.00 2.743±0.00 3.750±0.00 3.613±0.00 2.420±0.00 1.591±0.01 3.953±2.75 16.058±15.20 5.973±5.85 13.166±10.32
ENST00000513888 N/A N/A N/A 2.747±0.00 3.826±0.00 1.939±0.00 N/A N/A 3.465±0.00 2.554±0.00 N/A 8.026±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00048P CIL_00048P_0001 CGP 5:6599239-6669562

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000049 IEA tRNA binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0007067 IEA mitotic nuclear division
GO:0008168 IEA methyltransferase activity
GO:0016428 IDA tRNA (cytosine-5-)-methyltransferase activity
GO:0030488 IDA tRNA methylation
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056665 nsun2 NOL1/NOP2/Sun domain family, member 2 protein_coding Danio_rerio
ENSMUSG00000021595 Nsun2 NOL1/NOP2/Sun domain family member 2 protein_coding Mus_musculus

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