C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: large 60S subunit nuclear export GTPase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000041802 LSG1 9606 - 3:194640788-194672477 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265245 LSG1-001 194640788-194672477 protein_coding
  ENST00000427461 LSG1-003 194659106-194672162 nonsense_mediated_decay
  ENST00000437613 LSG1-004 194644666-194653102 protein_coding
  ENST00000460584 LSG1-007 194642173-194649019 retained_intron
  ENST00000461343 LSG1-005 194650784-194652813 retained_intron
  ENST00000466391 LSG1-006 194650717-194651597 retained_intron
  ENST00000475763 LSG1-008 194642113-194646444 retained_intron
  ENST00000480853 LSG1-002 194670063-194672463 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265245ENST00000427461ENST00000460584
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265245 4.065±0.00 7.491±0.00 1.346±0.00 5.138±1.51 3.290±1.65 3.441±2.18 2.419±1.55 6.783±0.00 3.160±1.10 3.917±0.90 3.748±2.12 9.191±4.32 12.586±4.27 14.351±4.42
ENST00000427461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.366±0.00 N/A N/A N/A
ENST00000460584 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.736±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000NE CIL_0000NE_0001 CGP 3:194587673-194672477
CIL_0003YH CIL_0003YH_0001 CGP 3:194640788-194689037

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 IBA GTPase activity
GO:0005525 IDA:IEA GTP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005783 IDA endoplasmic reticulum
GO:0005829 IBA cytosol
GO:0006184 IBA GTP catabolic process
GO:0015030 IDA Cajal body
GO:0015031 IEA protein transport
GO:0016020 IDA membrane
GO:0042254 IBA ribosome biogenesis
GO:0051168 IDA nuclear export

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015352 lsg1 large subunit GTPase 1 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000022538 Lsg1 large subunit GTPase 1 homolog (S. cerevisiae) protein_coding Mus_musculus

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