C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0003YH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000041802-ENSG00000185112 CGP 9606 3:194640788-194689037
GeneTranscriptPositionBiotype
ENSG00000041802 (LSG1)
large 60S subunit nuclear export GTPase 1
ENST00000265245 (LSG1-001) 194640788-194672477 protein_coding
ENST00000427461 (LSG1-003) 194659106-194672162 nonsense_mediated_decay
ENST00000437613 (LSG1-004) 194644666-194653102 protein_coding
ENST00000460584 (LSG1-007) 194642173-194649019 retained_intron
ENST00000461343 (LSG1-005) 194650784-194652813 retained_intron
ENST00000466391 (LSG1-006) 194650717-194651597 retained_intron
ENST00000475763 (LSG1-008) 194642113-194646444 retained_intron
ENST00000480853 (LSG1-002) 194670063-194672463 processed_transcript
ENSG00000185112 (FAM43A)
family with sequence similarity 43, member A
ENST00000329759 (FAM43A-001) 194686544-194689037 protein_coding
CIL_0003YH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022538-ENSMUSG00000046546 CGP 10090 16:30560494-30602797
GeneTranscriptPositionBiotype
ENSMUSG00000022538 (Lsg1)
large subunit GTPase 1 homolog (S. cerevisiae)
ENSMUST00000117363 (Lsg1-001) 30560494-30587592 protein_coding
ENSMUST00000123286 (Lsg1-008) 30571371-30585650 protein_coding
ENSMUST00000124858 (Lsg1-007) 30565030-30568109 retained_intron
ENSMUST00000128561 (Lsg1-006) 30573316-30587574 retained_intron
ENSMUST00000129004 (Lsg1-005) 30582253-30587539 retained_intron
ENSMUST00000143170 (Lsg1-004) 30561371-30587589 nonsense_mediated_decay
ENSMUST00000144666 (Lsg1-002) 30568013-30587592 retained_intron
ENSMUST00000150499 (Lsg1-003) 30564678-30587563 retained_intron
ENSMUSG00000046546 (Fam43a)
family with sequence similarity 43, member A
ENSMUST00000059078 (Fam43a-001) 30599723-30602797 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003YH_0001ENSG00000041802ENST00000265245ENST00000427461ENST00000437613ENST00000460584ENST00000461343ENST00000466391ENST00000475763ENST00000480853ENSG00000185112ENST00000329759CIL_0003YH_0002ENSMUSG00000022538ENSMUST00000117363ENSMUST00000123286ENSMUST00000124858ENSMUST00000128561ENSMUST00000129004ENSMUST00000143170ENSMUST00000144666ENSMUST00000150499ENSMUSG00000046546ENSMUST00000059078
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003YH_0001ENSG00000041802ENST00000265245ENST00000427461ENST00000460584ENSG00000185112ENST00000329759CIL_0003YH_0002ENSMUSG00000022538ENSMUST00000117363ENSMUST00000123286ENSMUST00000128561ENSMUST00000143170ENSMUST00000150499ENSMUSG00000046546ENSMUST00000059078
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000041802 ENST00000265245 4.065±0.00 7.491±0.00 1.346±0.00 5.138±1.51 3.290±1.65 3.441±2.18 2.419±1.55 6.783±0.00 3.160±1.10 3.917±0.90 3.748±2.12 9.191±4.32 12.586±4.27 14.351±4.42
ENST00000427461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.366±0.00 N/A N/A N/A
ENST00000437613 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460584 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.736±0.00 N/A N/A N/A
ENST00000461343 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466391 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475763 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480853 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000185112 ENST00000329759 14.331±0.00 22.802±0.00 0.761±0.00 1.733±0.38 4.629±3.89 3.042±2.43 2.852±1.97 4.158±3.37 1.316±0.00 2.629±1.06 1.581±0.76 3.583±2.85 19.535±4.44 4.090±2.47
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022538 ENSMUST00000117363 0.846±0.11 1.575±0.29 N/A 1.054±0.00 0.941±0.31 1.713±0.03 0.560±0.04 0.912±0.17 1.253±0.38 1.306±0.07 0.774±0.12 1.677±0.17 N/A 0.895±0.15
ENSMUST00000123286 N/A N/A N/A 17.621±0.00 N/A N/A N/A N/A N/A N/A N/A 31.573±0.00 28.123±15.07 54.546±0.00
ENSMUST00000124858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128561 N/A N/A N/A N/A 6.538±1.74 5.258±0.69 N/A N/A 5.769±1.07 6.503±1.42 N/A 10.233±1.08 21.972±6.48 5.323±0.82
ENSMUST00000129004 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143170 4.323±1.24 7.411±1.53 3.074±0.08 5.022±3.02 5.050±1.54 3.012±0.75 2.126±0.43 5.106±0.94 3.892±1.43 4.392±0.64 1.937±0.70 9.739±3.48 12.778±9.24 7.181±4.82
ENSMUST00000144666 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150499 2.098±1.08 2.061±0.05 1.590±0.10 2.132±0.26 2.745±0.37 1.227±0.10 0.783±0.13 1.133±0.05 1.931±0.75 1.995±0.34 1.106±0.44 3.632±1.35 2.691±0.74 2.833±2.03
ENSMUSG00000046546 ENSMUST00000059078 15.825±4.28 24.891±2.39 4.690±0.61 3.176±1.29 35.011±17.05 9.329±0.79 6.709±3.50 14.096±1.64 2.801±0.87 21.828±7.73 2.770±0.69 18.391±8.06 5.536±3.07 0.226±0.13

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