C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: large 60S subunit nuclear export GTPase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000265245 LSG1-001 ENSG00000041802 9606 - 3:194640788-194672477 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265245
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265245 4.065±0.00 7.491±0.00 1.346±0.00 5.138±1.51 3.290±1.65 3.441±2.18 2.419±1.55 6.783±0.00 3.160±1.10 3.917±0.90 3.748±2.12 9.191±4.32 12.586±4.27 14.351±4.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000NE CIL_0000NE_0001 CGP 3:194587673-194672477
CIL_0003YH CIL_0003YH_0001 CGP 3:194640788-194689037

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IBA GTPase activity
GO:0005525 IDA:IEA GTP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005783 IDA endoplasmic reticulum
GO:0005829 IBA cytosol
GO:0006184 IBA GTP catabolic process
GO:0015030 IDA Cajal body
GO:0015031 IEA protein transport
GO:0016020 IDA membrane
GO:0042254 IBA ribosome biogenesis
GO:0051168 IDA nuclear export

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000150499 Lsg1-003 retained_intron Mus_musculus 0 863
ENSMUST00000117363 Lsg1-001 protein_coding Mus_musculus 0 863
ENSMUST00000143170 Lsg1-004 nonsense_mediated_decay Mus_musculus 0 859
ENSMUST00000128561 Lsg1-006 retained_intron Mus_musculus 0 676
ENSMUST00000144666 Lsg1-002 retained_intron Mus_musculus 0 359
ENSMUST00000123286 Lsg1-008 protein_coding Mus_musculus 0 257

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