C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: large subunit GTPase 1 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022538 Lsg1 10090 - 16:30560494-30587592 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000117363 Lsg1-001 30560494-30587592 protein_coding
  ENSMUST00000123286 Lsg1-008 30571371-30585650 protein_coding
  ENSMUST00000124858 Lsg1-007 30565030-30568109 retained_intron
  ENSMUST00000128561 Lsg1-006 30573316-30587574 retained_intron
  ENSMUST00000129004 Lsg1-005 30582253-30587539 retained_intron
  ENSMUST00000143170 Lsg1-004 30561371-30587589 nonsense_mediated_decay
  ENSMUST00000144666 Lsg1-002 30568013-30587592 retained_intron
  ENSMUST00000150499 Lsg1-003 30564678-30587563 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117363ENSMUST00000123286ENSMUST00000128561ENSMUST00000143170ENSMUST00000150499
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117363 0.846±0.11 1.575±0.29 N/A 1.054±0.00 0.941±0.31 1.713±0.03 0.560±0.04 0.912±0.17 1.253±0.38 1.306±0.07 0.774±0.12 1.677±0.17 N/A 0.895±0.15
ENSMUST00000123286 N/A N/A N/A 17.621±0.00 N/A N/A N/A N/A N/A N/A N/A 31.573±0.00 28.123±15.07 54.546±0.00
ENSMUST00000128561 N/A N/A N/A N/A 6.538±1.74 5.258±0.69 N/A N/A 5.769±1.07 6.503±1.42 N/A 10.233±1.08 21.972±6.48 5.323±0.82
ENSMUST00000143170 4.323±1.24 7.411±1.53 3.074±0.08 5.022±3.02 5.050±1.54 3.012±0.75 2.126±0.43 5.106±0.94 3.892±1.43 4.392±0.64 1.937±0.70 9.739±3.48 12.778±9.24 7.181±4.82
ENSMUST00000150499 2.098±1.08 2.061±0.05 1.590±0.10 2.132±0.26 2.745±0.37 1.227±0.10 0.783±0.13 1.133±0.05 1.931±0.75 1.995±0.34 1.106±0.44 3.632±1.35 2.691±0.74 2.833±2.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000NE CIL_0000NE_0002 CGP 16:30511855-30587592
CIL_0003YH CIL_0003YH_0002 CGP 16:30560494-30602797

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 IBA GTPase activity
GO:0005525 ISS GTP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005783 ISS endoplasmic reticulum
GO:0005829 IBA cytosol
GO:0006184 IBA GTP catabolic process
GO:0015030 ISS Cajal body
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0042254 IBA ribosome biogenesis
GO:0051168 ISS nuclear export

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015352 lsg1 large subunit GTPase 1 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000041802 LSG1 large 60S subunit nuclear export GTPase 1 protein_coding Homo_sapiens

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