C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tenascin C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000041982 TNC 9606 - 9:115019578-115118257 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000341037 TNC-011 115020560-115091147 protein_coding
  ENST00000350763 TNC-001 115020534-115118257 protein_coding
  ENST00000423613 TNC-009 115020946-115112757 protein_coding
  ENST00000460345 TNC-002 115030257-115035896 processed_transcript
  ENST00000473855 TNC-005 115046467-115073772 processed_transcript
  ENST00000476680 TNC-003 115036185-115063168 processed_transcript
  ENST00000481475 TNC-004 115048260-115055749 processed_transcript
  ENST00000498724 TNC-006 115036102-115073641 processed_transcript
  ENST00000534839 TNC-010 115090743-115118199 protein_coding
  ENST00000535648 TNC-201 115019578-115118257 protein_coding
  ENST00000537320 TNC-012 115021029-115091141 protein_coding
  ENST00000542877 TNC-007 115021157-115091018 protein_coding
  ENST00000544972 TNC-013 115029372-115064912 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000341037ENST00000350763ENST00000423613ENST00000537320ENST00000542877ENST00000544972
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000341037 1.933±0.00 N/A N/A N/A N/A N/A 0.720±0.00 N/A 1.858±1.66 N/A N/A 1.274±0.71 1.136±0.61 0.780±0.40
ENST00000350763 N/A 10.426±0.00 N/A 2.212±1.22 5.151±0.00 6.692±0.00 0.356±0.12 2.807±2.75 2.565±0.00 9.298±0.00 N/A 1.467±1.06 0.525±0.14 1.209±0.00
ENST00000423613 N/A N/A N/A N/A 2.148±0.00 N/A N/A N/A N/A 6.717±0.00 0.197±0.00 N/A N/A 0.937±0.00
ENST00000537320 7.232±0.00 33.889±0.00 6.057±0.00 2.036±1.29 14.139±8.69 22.942±4.76 0.418±0.02 10.608±10.26 6.567±6.36 11.887±0.00 0.962±0.00 1.337±0.69 1.159±0.55 2.425±1.53
ENST00000542877 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.648±0.00 N/A N/A N/A
ENST00000544972 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.633±1.12 3.857±0.00 3.440±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004OU CIL_0004OU_0001 CGP 9:114893343-115118257

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001649 IDA osteoblast differentiation
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005604 IEA basement membrane
GO:0005614 IEA interstitial matrix
GO:0005615 IDA extracellular space
GO:0005925 IDA focal adhesion
GO:0007155 IEA cell adhesion
GO:0007162 IEA negative regulation of cell adhesion
GO:0007528 IEA neuromuscular junction development
GO:0008284 IEA positive regulation of cell proliferation
GO:0009611 IEP response to wounding
GO:0009612 IEA response to mechanical stimulus
GO:0010628 IEA positive regulation of gene expression
GO:0014012 IEA peripheral nervous system axon regeneration
GO:0016020 IDA membrane
GO:0030198 TAS extracellular matrix organization
GO:0031012 IDA extracellular matrix
GO:0031175 IEA neuron projection development
GO:0042060 IEA wound healing
GO:0042475 IEA odontogenesis of dentin-containing tooth
GO:0045471 IEA response to ethanol
GO:0045545 IDA syndecan binding
GO:0060447 IEA bud outgrowth involved in lung branching
GO:0060739 IEA mesenchymal-epithelial cell signaling involved in prostate gland development
GO:0060740 IEA prostate gland epithelium morphogenesis
GO:0071300 IEA cellular response to retinoic acid
GO:0071305 IEA cellular response to vitamin D
GO:0071774 IEA response to fibroblast growth factor
GO:0071799 IEA cellular response to prostaglandin D stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021948 tnc tenascin C protein_coding Danio_rerio
ENSMUSG00000028364 Tnc tenascin C protein_coding Mus_musculus

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