C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004OU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000106952-ENSG00000041982 CGP 9606 9:114893343-115118257
GeneTranscriptPositionBiotype
ENSG00000041982 (TNC)
tenascin C 		ENST00000341037 (TNC-011) 115020560-115091147 protein_coding
ENST00000350763 (TNC-001) 115020534-115118257 protein_coding
ENST00000423613 (TNC-009) 115020946-115112757 protein_coding
ENST00000460345 (TNC-002) 115030257-115035896 processed_transcript
ENST00000473855 (TNC-005) 115046467-115073772 processed_transcript
ENST00000476680 (TNC-003) 115036185-115063168 processed_transcript
ENST00000481475 (TNC-004) 115048260-115055749 processed_transcript
ENST00000498724 (TNC-006) 115036102-115073641 processed_transcript
ENST00000534839 (TNC-010) 115090743-115118199 protein_coding
ENST00000535648 (TNC-201) 115019578-115118257 protein_coding
ENST00000537320 (TNC-012) 115021029-115091141 protein_coding
ENST00000542877 (TNC-007) 115021157-115091018 protein_coding
ENST00000544972 (TNC-013) 115029372-115064912 protein_coding
ENSG00000106952 (TNFSF8)
tumor necrosis factor (ligand) superfamily, member 8 		ENST00000223795 (TNFSF8-001) 114902844-114930417 protein_coding
ENST00000474301 (TNFSF8-002) 114893723-114904308 processed_transcript
ENST00000618336 (TNFSF8-201) 114893343-114930595 protein_coding
CIL_0004OU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028362-ENSMUSG00000028364 CGP 10090 4:63831308-64047015
GeneTranscriptPositionBiotype
ENSMUSG00000028362 (Tnfsf8)
tumor necrosis factor (ligand) superfamily, member 8 		ENSMUST00000030047 (Tnfsf8-001) 63831308-63861347 protein_coding
ENSMUSG00000028364 (Tnc)
tenascin C 		ENSMUST00000030056 (Tnc-001) 63959785-64020725 protein_coding
ENSMUST00000107371 (Tnc-003) 64012669-64020725 protein_coding
ENSMUST00000107372 (Tnc-002) 63959785-64020725 protein_coding
ENSMUST00000107377 (Tnc-201) 63959785-64047015 protein_coding
ENSMUSG00000084345 (Rpl17-ps4)
ribosomal protein L17, pseudogene 4 		ENSMUST00000120241 (Rpl17-ps4-001) 63895545-63896099 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004OU_0001ENSG00000041982ENST00000341037ENST00000350763ENST00000423613ENST00000460345ENST00000473855ENST00000476680ENST00000481475ENST00000498724ENST00000534839ENST00000535648ENST00000537320ENST00000542877ENST00000544972ENSG00000106952ENST00000223795ENST00000474301ENST00000618336CIL_0004OU_0002ENSMUSG00000028362ENSMUST00000030047ENSMUSG00000028364ENSMUST00000030056ENSMUST00000107371ENSMUST00000107372ENSMUST00000107377ENSMUSG00000084345ENSMUST00000120241
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004OU_0001ENSG00000041982ENST00000341037ENST00000350763ENST00000423613ENST00000537320ENST00000542877ENST00000544972ENSG00000106952ENST00000223795ENST00000474301ENST00000618336CIL_0004OU_0002ENSMUSG00000028362ENSMUST00000030047ENSMUSG00000028364ENSMUST00000030056ENSMUST00000107371ENSMUST00000107372ENSMUST00000107377ENSMUSG00000084345ENSMUST00000120241
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000041982 ENST00000341037 1.933±0.00 N/A N/A N/A N/A N/A 0.720±0.00 N/A 1.858±1.66 N/A N/A 1.274±0.71 1.136±0.61 0.780±0.40
ENST00000350763 N/A 10.426±0.00 N/A 2.212±1.22 5.151±0.00 6.692±0.00 0.356±0.12 2.807±2.75 2.565±0.00 9.298±0.00 N/A 1.467±1.06 0.525±0.14 1.209±0.00
ENST00000423613 N/A N/A N/A N/A 2.148±0.00 N/A N/A N/A N/A 6.717±0.00 0.197±0.00 N/A N/A 0.937±0.00
ENST00000460345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473855 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476680 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481475 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534839 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535648 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537320 7.232±0.00 33.889±0.00 6.057±0.00 2.036±1.29 14.139±8.69 22.942±4.76 0.418±0.02 10.608±10.26 6.567±6.36 11.887±0.00 0.962±0.00 1.337±0.69 1.159±0.55 2.425±1.53
ENST00000542877 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.648±0.00 N/A N/A N/A
ENST00000544972 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.633±1.12 3.857±0.00 3.440±0.00
ENSG00000106952 ENST00000223795 0.519±0.00 2.046±0.00 0.075±0.00 0.165±0.02 0.824±0.50 0.305±0.19 0.268±0.02 0.172±0.13 0.409±0.27 N/A 0.043±0.00 0.439±0.17 1.312±0.14 0.092±0.04
ENST00000474301 N/A 4.466±0.00 N/A N/A N/A N/A N/A N/A 0.101±0.00 N/A N/A N/A N/A N/A
ENST00000618336 0.273±0.00 2.525±0.00 N/A 0.085±0.05 0.292±0.15 N/A 0.045±0.00 0.209±0.10 N/A 0.803±0.00 N/A 0.068±0.03 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028362 ENSMUST00000030047 0.064±0.05 0.100±0.08 0.119±0.01 0.016±0.01 1.039±0.40 0.045±0.02 0.026±0.01 0.065±0.03 0.020±0.01 0.148±0.06 0.015±0.01 0.096±0.06 0.035±0.03 0.014±0.01
ENSMUSG00000028364 ENSMUST00000030056 4.034±2.61 0.408±0.00 18.704±1.45 1.570±0.00 0.936±0.21 7.240±0.75 0.132±0.04 0.590±0.13 0.185±0.15 1.260±0.37 0.299±0.24 50.987±10.94 1.409±1.20 0.288±0.12
ENSMUST00000107371 N/A N/A N/A N/A N/A N/A N/A N/A 0.081±0.00 N/A N/A N/A N/A N/A
ENSMUST00000107372 0.339±0.00 N/A N/A 11.800±6.61 0.431±0.00 N/A 0.102±0.04 N/A N/A 0.477±0.02 0.125±0.00 14.898±8.13 0.228±0.12 0.143±0.00
ENSMUST00000107377 N/A 1.786±0.70 9.261±0.00 N/A N/A N/A 0.117±0.07 1.894±0.00 0.121±0.00 1.593±0.19 0.209±0.02 23.053±11.97 N/A 0.099±0.00
ENSMUSG00000084345 ENSMUST00000120241 0.125±0.02 N/A 0.080±0.06 0.612±0.53 0.358±0.21 N/A 0.096±0.00 N/A 0.630±1.12 0.176±0.00 N/A 0.094±0.00 0.061±0.05 N/A

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