C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tenascin C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000350763 TNC-001 ENSG00000041982 9606 - 9:115020534-115118257 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000350763
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000350763 10.426±0.00 2.212±1.22 5.151±0.00 6.692±0.00 0.356±0.12 2.807±2.75 2.565±0.00 9.298±0.00 1.467±1.06 0.525±0.14 1.209±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004OU CIL_0004OU_0001 CGP 9:114893343-115118257

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001649 IDA osteoblast differentiation
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005604 IEA basement membrane
GO:0005614 IEA interstitial matrix
GO:0005615 IDA extracellular space
GO:0005925 IDA focal adhesion
GO:0007155 IEA cell adhesion
GO:0007162 IEA negative regulation of cell adhesion
GO:0007528 IEA neuromuscular junction development
GO:0008284 IEA positive regulation of cell proliferation
GO:0009611 IEP response to wounding
GO:0009612 IEA response to mechanical stimulus
GO:0010628 IEA positive regulation of gene expression
GO:0014012 IEA peripheral nervous system axon regeneration
GO:0016020 IDA membrane
GO:0030198 TAS extracellular matrix organization
GO:0031012 IDA extracellular matrix
GO:0031175 IEA neuron projection development
GO:0042060 IEA wound healing
GO:0042475 IEA odontogenesis of dentin-containing tooth
GO:0045471 IEA response to ethanol
GO:0045545 IDA syndecan binding
GO:0060447 IEA bud outgrowth involved in lung branching
GO:0060739 IEA mesenchymal-epithelial cell signaling involved in prostate gland development
GO:0060740 IEA prostate gland epithelium morphogenesis
GO:0071300 IEA cellular response to retinoic acid
GO:0071305 IEA cellular response to vitamin D
GO:0071774 IEA response to fibroblast growth factor
GO:0071799 IEA cellular response to prostaglandin D stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107377 Tnc-201 protein_coding Mus_musculus 0 3930
ENSMUST00000107372 Tnc-002 protein_coding Mus_musculus 0 3801
ENSMUST00000030056 Tnc-001 protein_coding Mus_musculus 0 3801
ENSMUST00000107371 Tnc-003 protein_coding Mus_musculus 0 2337

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