C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tenascin C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000537320 TNC-012 ENSG00000041982 9606 - 9:115021029-115091141 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000537320
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000537320 7.232±0.00 33.889±0.00 6.057±0.00 2.036±1.29 14.139±8.69 22.942±4.76 0.418±0.02 10.608±10.26 6.567±6.36 11.887±0.00 0.962±0.00 1.337±0.69 1.159±0.55 2.425±1.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004OU CIL_0004OU_0001 CGP 9:114893343-115118257

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001649 IDA osteoblast differentiation
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005615 IDA extracellular space
GO:0005925 IDA focal adhesion
GO:0007155 IEA cell adhesion
GO:0009611 IEP response to wounding
GO:0016020 IDA membrane
GO:0030198 TAS extracellular matrix organization
GO:0031012 IDA extracellular matrix
GO:0045545 IDA syndecan binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107377 Tnc-201 protein_coding Mus_musculus 0 3190
ENSMUST00000107372 Tnc-002 protein_coding Mus_musculus 0 3190
ENSMUST00000030056 Tnc-001 protein_coding Mus_musculus 0 3190
ENSMUST00000107371 Tnc-003 protein_coding Mus_musculus 0 2337

Loading