C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tenascin C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028364 Tnc 10090 - 4:63959785-64047015 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030056 Tnc-001 63959785-64020725 protein_coding
  ENSMUST00000107371 Tnc-003 64012669-64020725 protein_coding
  ENSMUST00000107372 Tnc-002 63959785-64020725 protein_coding
  ENSMUST00000107377 Tnc-201 63959785-64047015 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030056ENSMUST00000107371ENSMUST00000107372ENSMUST00000107377
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030056 4.034±2.61 0.408±0.00 18.704±1.45 1.570±0.00 0.936±0.21 7.240±0.75 0.132±0.04 0.590±0.13 0.185±0.15 1.260±0.37 0.299±0.24 50.987±10.94 1.409±1.20 0.288±0.12
ENSMUST00000107371 N/A N/A N/A N/A N/A N/A N/A N/A 0.081±0.00 N/A N/A N/A N/A N/A
ENSMUST00000107372 0.339±0.00 N/A N/A 11.800±6.61 0.431±0.00 N/A 0.102±0.04 N/A N/A 0.477±0.02 0.125±0.00 14.898±8.13 0.228±0.12 0.143±0.00
ENSMUST00000107377 N/A 1.786±0.70 9.261±0.00 N/A N/A N/A 0.117±0.07 1.894±0.00 0.121±0.00 1.593±0.19 0.209±0.02 23.053±11.97 N/A 0.099±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004OU CIL_0004OU_0002 CGP 4:63831308-64047015

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001649 IEA osteoblast differentiation
GO:0005576 IDA extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005604 IDA basement membrane
GO:0005614 IDA interstitial matrix
GO:0005615 IEA extracellular space
GO:0005925 IEA focal adhesion
GO:0007155 IEA cell adhesion
GO:0007162 IEA negative regulation of cell adhesion
GO:0007528 IMP neuromuscular junction development
GO:0008284 IDA positive regulation of cell proliferation
GO:0009611 IEA response to wounding
GO:0009612 IEA response to mechanical stimulus
GO:0010628 IDA positive regulation of gene expression
GO:0014012 IMP peripheral nervous system axon regeneration
GO:0016020 IEA membrane
GO:0031012 IDA extracellular matrix
GO:0031175 IEA neuron projection development
GO:0042060 IEA wound healing
GO:0042475 IEA odontogenesis of dentin-containing tooth
GO:0045471 IEA response to ethanol
GO:0045545 ISO syndecan binding
GO:0060447 IEA bud outgrowth involved in lung branching
GO:0060739 IMP mesenchymal-epithelial cell signaling involved in prostate gland development
GO:0060740 IMP prostate gland epithelium morphogenesis
GO:0071300 IEA cellular response to retinoic acid
GO:0071305 IEA cellular response to vitamin D
GO:0071774 IEA response to fibroblast growth factor
GO:0071799 IEA cellular response to prostaglandin D stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021948 tnc tenascin C protein_coding Danio_rerio
ENSG00000041982 TNC tenascin C protein_coding Homo_sapiens

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