C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: thyroglobulin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000042832 TG 9606 + 8:132866958-133134903 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000220616 TG-001 132866961-133134897 protein_coding
  ENST00000518058 TG-004 132962994-132967897 protein_coding
  ENST00000518097 TG-018 132897734-132899000 retained_intron
  ENST00000518108 TG-010 133017699-133029979 protein_coding
  ENST00000518505 TG-017 132897748-132906900 protein_coding
  ENST00000519178 TG-003 132919440-133134827 protein_coding
  ENST00000519294 TG-012 132971827-133003256 processed_transcript
  ENST00000519543 TG-005 132964607-133134903 protein_coding
  ENST00000520089 TG-015 132969486-132983753 retained_intron
  ENST00000520197 TG-011 132969458-133003256 processed_transcript
  ENST00000520769 TG-019 132881872-132883240 retained_intron
  ENST00000521107 TG-007 133113503-133134891 protein_coding
  ENST00000522523 TG-016 132972261-133017967 processed_transcript
  ENST00000522691 TG-006 133133387-133134877 retained_intron
  ENST00000522797 TG-013 132972632-133013683 nonsense_mediated_decay
  ENST00000522809 TG-008 133095159-133113668 retained_intron
  ENST00000522996 TG-009 133094623-133113496 retained_intron
  ENST00000523756 TG-002 132897689-133134897 nonsense_mediated_decay
  ENST00000523901 TG-020 132866958-132881895 nonsense_mediated_decay
  ENST00000524151 TG-014 132971851-133002285 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000220616ENST00000518097ENST00000518108ENST00000518505ENST00000519178ENST00000519294ENST00000519543ENST00000520089ENST00000520197ENST00000520769ENST00000521107ENST00000522523ENST00000522691ENST00000522809ENST00000522996ENST00000523756
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000220616 0.051±0.00 N/A N/A 0.026±0.01 N/A 0.063±0.01 0.019±0.00 0.029±0.00 N/A N/A N/A 0.895±0.54 0.036±0.01 N/A
ENST00000518097 N/A N/A N/A N/A N/A 1.013±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518108 N/A N/A N/A N/A N/A N/A 0.141±0.00 N/A N/A N/A N/A N/A 0.350±0.00 N/A
ENST00000518505 N/A N/A N/A 0.264±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.183±0.00 N/A
ENST00000519178 N/A N/A 0.270±0.00 N/A 0.380±0.21 N/A N/A 0.401±0.00 N/A 0.019±0.00 N/A 0.143±0.00 N/A 0.353±0.14
ENST00000519294 N/A N/A N/A N/A N/A N/A N/A N/A 0.791±0.00 N/A 0.139±0.00 N/A N/A N/A
ENST00000519543 N/A N/A N/A 0.047±0.00 N/A N/A 0.026±0.00 N/A N/A N/A N/A N/A 0.099±0.00 0.464±0.00
ENST00000520089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.984±0.00 N/A N/A
ENST00000520197 0.318±0.00 N/A N/A N/A N/A N/A 0.103±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000520769 N/A N/A N/A N/A N/A N/A N/A N/A 0.773±0.00 0.433±0.00 N/A N/A N/A N/A
ENST00000521107 N/A 0.824±0.00 N/A N/A 0.425±0.00 N/A N/A 3.694±0.00 N/A N/A N/A 12.678±0.00 0.231±0.00 1.045±0.00
ENST00000522523 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.110±0.00 N/A 1.220±0.00 N/A N/A
ENST00000522691 0.796±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.211±0.00 N/A
ENST00000522809 N/A N/A 0.840±0.00 0.163±0.00 N/A N/A N/A N/A 0.789±0.00 0.140±0.00 N/A 1.707±0.00 0.469±0.10 N/A
ENST00000522996 N/A N/A N/A N/A N/A 0.314±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523756 0.100±0.00 0.124±0.00 N/A 0.016±0.00 N/A 0.221±0.00 N/A N/A 0.068±0.00 N/A N/A 1.231±0.99 N/A 0.363±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004PY CIL_0004PY_0001 CGP 8:132775358-133134903
CIL_0009D4 CIL_0009D4_0001 VISTA 8:132792656-133394938
CIL_0004PV CIL_0004PV_0001 CGP 8:132866958-133134903

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005179 IEA hormone activity
GO:0005576 NAS extracellular region
GO:0005615 IBA extracellular space
GO:0006590 IBA thyroid hormone generation
GO:0007165 NAS signal transduction
GO:0015705 IEA iodide transport
GO:0030878 IEP thyroid gland development
GO:0031641 IEA regulation of myelination
GO:0042403 IEA thyroid hormone metabolic process
GO:0042446 IEA hormone biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020084 tg thyroglobulin protein_coding Danio_rerio
ENSMUSG00000053469 Tg thyroglobulin protein_coding Mus_musculus

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