C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: thyroglobulin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000053469 Tg 10090 + 15:66670753-66850721 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000065916 Tg-001 66670753-66850721 protein_coding
  ENSMUST00000163495 Tg-004 66688836-66850607 nonsense_mediated_decay
  ENSMUST00000166403 Tg-002 66798750-66850721 processed_transcript
  ENSMUST00000166906 Tg-008 66715889-66725247 processed_transcript
  ENSMUST00000167344 Tg-007 66716531-66729629 processed_transcript
  ENSMUST00000167512 Tg-006 66701279-66715135 processed_transcript
  ENSMUST00000171045 Tg-003 66705290-66850607 protein_coding
  ENSMUST00000172153 Tg-005 66736250-66850721 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000065916ENSMUST00000163495ENSMUST00000166403ENSMUST00000166906ENSMUST00000167512ENSMUST00000171045ENSMUST00000172153
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000065916 0.013±0.01 N/A N/A N/A 0.014±0.00 N/A 0.068±0.02 N/A 0.011±0.00 0.085±0.02 0.010±0.00 0.024±0.01 0.012±0.00 0.210±0.02
ENSMUST00000163495 0.004±0.00 0.045±0.01 0.017±0.00 0.015±0.00 0.067±0.02 N/A 0.059±0.00 N/A 0.016±0.00 0.225±0.10 0.020±0.00 0.097±0.00 0.015±0.00 0.528±0.26
ENSMUST00000166403 0.045±0.02 0.048±0.03 N/A 0.031±0.02 0.107±0.00 0.387±0.15 0.665±0.17 0.198±0.07 0.382±0.23 N/A 0.074±0.02 0.204±0.06 0.222±0.11 0.943±0.27
ENSMUST00000166906 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.054±0.00 N/A N/A N/A
ENSMUST00000167512 N/A N/A N/A N/A N/A 0.427±0.00 N/A N/A N/A N/A N/A 0.289±0.00 N/A N/A
ENSMUST00000171045 0.019±0.00 0.089±0.00 0.042±0.00 N/A N/A 0.019±0.00 0.271±0.00 0.030±0.01 N/A 0.063±0.00 0.009±0.00 0.109±0.05 N/A N/A
ENSMUST00000172153 0.034±0.00 0.065±0.03 0.028±0.00 0.023±0.02 0.154±0.07 N/A N/A N/A N/A 0.267±0.00 N/A 0.263±0.18 0.099±0.05 0.480±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009D4 CIL_0009D4_0002 VISTA 15:66524301-67127162
CIL_0004PY CIL_0004PY_0002 CGP 15:66577572-66850721
CIL_0004PV CIL_0004PV_0002 CGP 15:66670753-66850721

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005179 IEA hormone activity
GO:0005576 IEA extracellular region
GO:0005615 IDA extracellular space
GO:0006590 IBA thyroid hormone generation
GO:0015705 IMP iodide transport
GO:0030878 IEA thyroid gland development
GO:0031641 IMP regulation of myelination
GO:0042403 IMP thyroid hormone metabolic process
GO:0042446 IEA hormone biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020084 tg thyroglobulin protein_coding Danio_rerio
ENSG00000042832 TG thyroglobulin protein_coding Homo_sapiens

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