C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thyroglobulin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000220616 TG-001 ENSG00000042832 9606 + 8:132866961-133134897 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartKidneyOvaryPlacentaENST00000220616
Transcript ID Adipose Brain Colon Heart Kidney Ovary Placenta
ENST00000220616 0.051±0.00 0.026±0.01 0.063±0.01 0.019±0.00 0.029±0.00 0.895±0.54 0.036±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004PY CIL_0004PY_0001 CGP 8:132775358-133134903
CIL_0009D4 CIL_0009D4_0001 VISTA 8:132792656-133394938
CIL_0004PV CIL_0004PV_0001 CGP 8:132866958-133134903

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005179 IEA hormone activity
GO:0005576 NAS extracellular region
GO:0005615 IBA extracellular space
GO:0006590 IBA thyroid hormone generation
GO:0007165 NAS signal transduction
GO:0015705 IEA iodide transport
GO:0030878 IEP thyroid gland development
GO:0031641 IEA regulation of myelination
GO:0042403 IEA thyroid hormone metabolic process
GO:0042446 IEA hormone biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000065916 Tg-001 protein_coding Mus_musculus 0 5613
ENSMUST00000163495 Tg-004 nonsense_mediated_decay Mus_musculus 0 3210
ENSMUST00000171045 Tg-003 protein_coding Mus_musculus 0 2246
ENSMUST00000172153 Tg-005 protein_coding Mus_musculus 0 1541
ENSMUST00000166403 Tg-002 processed_transcript Mus_musculus 0 885

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