C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: period circadian clock 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000049246 PER3 9606 + 1:7784320-7845177 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000361923 PER3-002 7784703-7845177 protein_coding
  ENST00000377532 PER3-001 7784654-7845177 protein_coding
  ENST00000377541 PER3-003 7784320-7803958 protein_coding
  ENST00000463106 PER3-006 7803051-7810347 retained_intron
  ENST00000473653 PER3-005 7785523-7788338 retained_intron
  ENST00000494684 PER3-004 7836808-7842884 retained_intron
  ENST00000602883 PER3-007 7787322-7788570 retained_intron
  ENST00000613533 PER3-201 7784429-7845176 protein_coding
  ENST00000614998 PER3-202 7784429-7845176 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000361923ENST00000377532ENST00000613533ENST00000614998
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000361923 N/A N/A N/A N/A N/A N/A 2.251±1.33 0.198±0.00 1.368±0.00 1.150±0.79 N/A 0.912±0.00
ENST00000377532 N/A N/A N/A 1.087±0.00 N/A 1.052±0.38 N/A 0.167±0.00 1.064±0.00 1.339±0.30 0.470±0.29 1.130±0.00
ENST00000613533 N/A N/A N/A N/A N/A 0.681±0.00 N/A N/A N/A N/A N/A N/A
ENST00000614998 1.961±0.00 1.371±0.00 1.340±0.63 1.632±0.00 0.647±0.00 0.799±0.00 N/A 1.853±0.00 N/A 1.703±1.27 0.402±0.13 1.591±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VW CIL_0007VW_0001 VISTA 1:7770379-8371827
CIL_00019M CIL_00019M_0002 CGP 1:7771269-7845177

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0004871 IEA signal transducer activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0007623 IEA circadian rhythm
GO:0019900 IEA kinase binding
GO:0031625 IEA ubiquitin protein ligase binding
GO:0032922 IEA circadian regulation of gene expression
GO:0045187 IMP regulation of circadian sleep/wake cycle, sleep

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010519 per3 period homolog 3 (Drosophila) protein_coding Danio_rerio
ENSMUSG00000028957 Per3 period circadian clock 3 protein_coding Mus_musculus

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