C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: period circadian clock 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361923 PER3-002 ENSG00000049246 9606 + 1:7784703-7845177 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLiverMuscleOvaryTestisENST00000361923
Transcript ID Kidney Liver Muscle Ovary Testis
ENST00000361923 2.251±1.33 0.198±0.00 1.368±0.00 1.150±0.79 0.912±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VW CIL_0007VW_0001 VISTA 1:7770379-8371827
CIL_00019M CIL_00019M_0002 CGP 1:7771269-7845177

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004871 IEA signal transducer activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0032922 IEA circadian regulation of gene expression
GO:0045187 IMP regulation of circadian sleep/wake cycle, sleep

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103204 Per3-001 protein_coding Mus_musculus 0 1500
ENSMUST00000128283 Per3-002 retained_intron Mus_musculus 0 1312
ENSMUST00000136398 Per3-004 nonsense_mediated_decay Mus_musculus 0 998
ENSMUST00000138584 Per3-003 retained_intron Mus_musculus 0 645

Loading