C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00019M_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000070161-ENSDARG00000010519 CGP 7955 11:41405002-41490992
GeneTranscriptPositionBiotype
ENSDARG00000010519 (per3)
period homolog 3 (Drosophila) 		ENSDART00000024304 (per3-001) 41435220-41490992 protein_coding
ENSDART00000131622 (per3-002) 41445478-41452974 processed_transcript
ENSDARG00000070161 (vamp3)
vesicle-associated membrane protein 3 (cellubrevin) 		ENSDART00000102734 (vamp3-201) 41405002-41430774 protein_coding
ENSDART00000134082 (vamp3-002) 41405058-41429792 processed_transcript
ENSDART00000137516 (vamp3-001) 41405002-41430774 protein_coding
CIL_00019M_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000049245-ENSG00000049246 CGP 9606 1:7771269-7845177
GeneTranscriptPositionBiotype
ENSG00000049245 (VAMP3)
vesicle-associated membrane protein 3 		ENST00000054666 (VAMP3-001) 7771269-7781432 protein_coding
ENST00000470357 (VAMP3-002) 7772707-7779806 protein_coding
ENST00000487194 (VAMP3-003) 7777097-7778169 retained_intron
ENSG00000049246 (PER3)
period circadian clock 3 		ENST00000361923 (PER3-002) 7784703-7845177 protein_coding
ENST00000377532 (PER3-001) 7784654-7845177 protein_coding
ENST00000377541 (PER3-003) 7784320-7803958 protein_coding
ENST00000463106 (PER3-006) 7803051-7810347 retained_intron
ENST00000473653 (PER3-005) 7785523-7788338 retained_intron
ENST00000494684 (PER3-004) 7836808-7842884 retained_intron
ENST00000602883 (PER3-007) 7787322-7788570 retained_intron
ENST00000613533 (PER3-201) 7784429-7845176 protein_coding
ENST00000614998 (PER3-202) 7784429-7845176 protein_coding
ENSG00000269925 (RP3-467L1.6)
 ENST00000602406 (RP3-467L1.6-001) 7776383-7776775 sense_intronic

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00019M_0001ENSDARG00000010519ENSDART00000024304ENSDART00000131622ENSDARG00000070161ENSDART00000102734ENSDART00000134082ENSDART00000137516CIL_00019M_0002ENSG00000049245ENST00000054666ENST00000470357ENST00000487194ENSG00000049246ENST00000361923ENST00000377532ENST00000377541ENST00000463106ENST00000473653ENST00000494684ENST00000602883ENST00000613533ENST00000614998ENSG00000269925ENST00000602406
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00019M_0001ENSDARG00000010519ENSDART00000024304ENSDART00000131622ENSDARG00000070161ENSDART00000102734ENSDART00000134082ENSDART00000137516CIL_00019M_0002ENSG00000049245ENST00000054666ENST00000470357ENST00000487194ENSG00000049246ENST00000361923ENST00000377532ENST00000613533ENST00000614998ENSG00000269925ENST00000602406
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000010519 ENSDART00000024304 N/A N/A N/A 5.548±0.00 N/A N/A 0.928±0.17 0.754±0.00 0.634±0.00 N/A N/A N/A N/A N/A
ENSDART00000131622 N/A N/A N/A N/A N/A N/A 0.677±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000070161 ENSDART00000102734 N/A N/A N/A 7.511±2.25 N/A N/A 38.404±11.54 14.288±6.39 1.053±0.00 N/A 21.510±0.00 N/A N/A N/A
ENSDART00000134082 N/A N/A N/A N/A N/A N/A 16.773±0.00 N/A 2.405±0.00 N/A N/A N/A N/A N/A
ENSDART00000137516 N/A N/A N/A 19.402±10.91 N/A N/A 52.635±13.35 32.023±7.93 0.996±0.00 N/A 8.480±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000049245 ENST00000054666 50.897±0.00 32.140±0.00 5.790±0.00 27.290±18.13 30.160±19.89 19.017±6.08 13.105±9.50 19.338±10.38 9.093±0.71 26.542±8.96 12.169±8.92 34.082±11.15 48.170±4.70 27.286±1.81
ENST00000470357 N/A N/A N/A N/A N/A N/A N/A 2.736±0.00 2.569±0.00 N/A 1.562±0.00 N/A N/A N/A
ENST00000487194 N/A N/A N/A 46.200±0.00 N/A N/A N/A N/A 20.976±0.00 N/A 14.819±0.00 N/A N/A N/A
ENSG00000049246 ENST00000361923 N/A N/A N/A N/A N/A N/A N/A 2.251±1.33 0.198±0.00 N/A 1.368±0.00 1.150±0.79 N/A 0.912±0.00
ENST00000377532 N/A N/A N/A N/A 1.087±0.00 N/A 1.052±0.38 N/A 0.167±0.00 N/A 1.064±0.00 1.339±0.30 0.470±0.29 1.130±0.00
ENST00000377541 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463106 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494684 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613533 N/A N/A N/A N/A N/A N/A 0.681±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000614998 N/A 1.961±0.00 1.371±0.00 1.340±0.63 1.632±0.00 0.647±0.00 0.799±0.00 N/A 1.853±0.00 N/A N/A 1.703±1.27 0.402±0.13 1.591±0.00
ENSG00000269925 ENST00000602406 0.174±0.00 0.629±0.00 1.291±0.00 2.097±1.44 2.077±1.56 2.169±0.82 0.569±0.34 1.016±0.00 0.501±0.48 3.225±2.56 N/A 1.672±0.72 0.235±0.11 0.726±0.02

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