C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: period circadian clock 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377532 PER3-001 ENSG00000049246 9606 + 1:7784654-7845177 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartLiverMuscleOvaryPlacentaTestisENST00000377532
Transcript ID Breast Heart Liver Muscle Ovary Placenta Testis
ENST00000377532 1.087±0.00 1.052±0.38 0.167±0.00 1.064±0.00 1.339±0.30 0.470±0.29 1.130±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VW CIL_0007VW_0001 VISTA 1:7770379-8371827
CIL_00019M CIL_00019M_0002 CGP 1:7771269-7845177

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004871 IEA signal transducer activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0032922 IEA circadian regulation of gene expression
GO:0045187 IMP regulation of circadian sleep/wake cycle, sleep

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103204 Per3-001 protein_coding Mus_musculus 0 1443
ENSMUST00000128283 Per3-002 retained_intron Mus_musculus 0 1315
ENSMUST00000136398 Per3-004 nonsense_mediated_decay Mus_musculus 0 994
ENSMUST00000138584 Per3-003 retained_intron Mus_musculus 0 617

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