C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pumilio RNA-binding family member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000055917 PUM2 9606 - 2:20248691-20352234 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000319801 PUM2-201 20248692-20327386 protein_coding
  ENST00000338086 PUM2-001 20248691-20327383 protein_coding
  ENST00000361078 PUM2-202 20248692-20350850 protein_coding
  ENST00000403432 PUM2-002 20251310-20350702 protein_coding
  ENST00000420234 PUM2-007 20308414-20350834 processed_transcript
  ENST00000424110 PUM2-009 20318593-20350702 protein_coding
  ENST00000429419 PUM2-008 20308490-20350621 nonsense_mediated_decay
  ENST00000432105 PUM2-005 20311640-20352234 nonsense_mediated_decay
  ENST00000440577 PUM2-003 20249864-20312256 protein_coding
  ENST00000442400 PUM2-006 20307981-20352222 protein_coding
  ENST00000446940 PUM2-004 20312299-20350301 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000319801ENST00000338086ENST00000361078ENST00000403432ENST00000440577ENST00000442400
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000319801 4.469±0.00 N/A 2.552±0.61 1.195±0.00 N/A 1.678±0.94 N/A N/A N/A N/A 6.641±0.00 1.899±0.11 N/A
ENST00000338086 2.978±0.00 N/A N/A 1.879±0.08 8.399±0.00 4.917±0.00 4.907±1.75 3.090±2.24 5.191±0.00 4.901±0.00 4.607±0.00 3.142±1.48 4.213±0.10
ENST00000361078 2.241±0.00 N/A N/A 2.139±0.00 3.870±0.00 N/A N/A 2.706±0.03 3.117±0.00 N/A 4.246±0.00 N/A 2.514±0.00
ENST00000403432 N/A 5.271±0.00 3.287±0.00 5.750±0.00 9.288±0.00 3.046±0.00 2.250±0.00 6.310±0.00 5.869±0.00 3.774±0.00 5.362±0.17 N/A N/A
ENST00000440577 N/A N/A 2.144±0.00 2.807±0.70 5.628±0.00 1.292±0.00 4.783±0.00 3.899±0.00 4.417±0.00 2.162±0.00 12.097±0.00 13.307±0.00 8.754±5.21
ENST00000442400 N/A N/A N/A N/A 14.462±0.00 4.684±0.00 7.080±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0006417 IEA regulation of translation
GO:0010494 ISS cytoplasmic stress granule
GO:0031965 IDA nuclear membrane
GO:0034063 IEA stress granule assembly
GO:0044822 IDA poly(A) RNA binding
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061040 pum2 pumilio homolog 2 (Drosophila) protein_coding Danio_rerio
ENSMUSG00000020594 Pum2 pumilio RNA-binding family member 2 protein_coding Mus_musculus

Loading