C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pumilio RNA-binding family member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020594 Pum2 10090 + 12:8674134-8752581 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020915 Pum2-003 8674145-8750320 protein_coding
  ENSMUST00000111122 Pum2-001 8674224-8752561 protein_coding
  ENSMUST00000111123 Pum2-002 8674134-8751454 protein_coding
  ENSMUST00000163569 Pum2-006 8674421-8750001 protein_coding
  ENSMUST00000163730 Pum2-014 8674765-8713399 protein_coding
  ENSMUST00000164818 Pum2-013 8729147-8748236 protein_coding
  ENSMUST00000165293 Pum2-004 8674275-8752557 nonsense_mediated_decay
  ENSMUST00000166965 Pum2-010 8677534-8709490 protein_coding
  ENSMUST00000168361 Pum2-201 8674681-8752581 protein_coding
  ENSMUST00000169089 Pum2-005 8674470-8750028 protein_coding
  ENSMUST00000169177 Pum2-008 8674259-8707368 processed_transcript
  ENSMUST00000169750 Pum2-009 8674736-8713630 protein_coding
  ENSMUST00000170037 Pum2-007 8698096-8713913 nonsense_mediated_decay
  ENSMUST00000171418 Pum2-011 8710226-8721797 protein_coding
  ENSMUST00000171608 Pum2-012 8743476-8744395 retained_intron
  ENSMUST00000178015 Pum2-202 8674134-8752581 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020915ENSMUST00000111122ENSMUST00000111123ENSMUST00000163569ENSMUST00000163730ENSMUST00000165293ENSMUST00000168361ENSMUST00000169089ENSMUST00000178015
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020915 N/A N/A N/A N/A 7.262±0.10 4.824±0.00 3.706±0.00 N/A N/A N/A N/A 10.368±0.75 N/A N/A
ENSMUST00000111122 7.932±0.99 6.106±0.95 8.740±0.14 13.715±1.07 4.428±0.00 4.220±0.89 5.487±1.74 8.465±1.40 6.239±3.47 8.365±0.00 3.176±1.02 4.963±0.03 9.580±3.23 2.796±0.47
ENSMUST00000111123 N/A N/A N/A 7.728±0.00 N/A N/A N/A N/A N/A N/A N/A 9.597±0.00 5.607±0.81 3.189±0.00
ENSMUST00000163569 4.264±0.24 N/A N/A N/A 8.821±2.47 7.204±3.18 N/A 4.132±0.00 N/A 5.155±0.00 N/A 18.797±7.72 5.559±0.00 7.692±0.66
ENSMUST00000163730 N/A N/A N/A 51.734±0.00 N/A N/A N/A N/A N/A N/A N/A 46.731±0.00 37.332±0.40 15.098±0.00
ENSMUST00000165293 N/A N/A N/A 4.414±0.47 N/A N/A 3.950±1.09 3.216±0.00 1.317±0.00 N/A 5.051±0.88 N/A N/A 2.202±0.06
ENSMUST00000168361 N/A N/A N/A N/A 9.213±0.00 N/A N/A N/A 2.872±0.11 6.002±0.00 N/A 8.348±3.23 N/A N/A
ENSMUST00000169089 11.478±3.10 19.955±6.12 N/A N/A 15.936±4.01 13.151±3.32 5.861±0.50 8.499±1.13 4.413±0.40 16.419±4.02 N/A 16.714±6.27 N/A 4.447±1.14
ENSMUST00000178015 3.424±0.00 11.653±0.00 10.272±4.82 15.574±3.85 N/A N/A 4.273±0.88 4.334±0.64 6.014±1.46 6.306±1.31 2.317±0.52 9.623±3.10 8.610±1.30 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PO CIL_0008PO_0002 VISTA 12:8085675-8687404

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0006417 IEA regulation of translation
GO:0010494 IDA cytoplasmic stress granule
GO:0031965 IEA nuclear membrane
GO:0034063 IDA stress granule assembly
GO:0044822 IEA poly(A) RNA binding
GO:0048471 ISS perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061040 pum2 pumilio homolog 2 (Drosophila) protein_coding Danio_rerio
ENSG00000055917 PUM2 pumilio RNA-binding family member 2 protein_coding Homo_sapiens

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