C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pumilio RNA-binding family member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000440577 PUM2-003 ENSG00000055917 9606 - 2:20249864-20312256 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000440577
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000440577 2.144±0.00 2.807±0.70 5.628±0.00 1.292±0.00 4.783±0.00 3.899±0.00 4.417±0.00 2.162±0.00 12.097±0.00 13.307±0.00 8.754±5.21

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0006417 IEA regulation of translation
GO:0010494 ISS cytoplasmic stress granule
GO:0031965 IDA nuclear membrane
GO:0044822 IDA poly(A) RNA binding
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178015 Pum2-202 protein_coding Mus_musculus 0 4146
ENSMUST00000169089 Pum2-005 protein_coding Mus_musculus 0 4146
ENSMUST00000165293 Pum2-004 nonsense_mediated_decay Mus_musculus 0 4146
ENSMUST00000020915 Pum2-003 protein_coding Mus_musculus 0 4048
ENSMUST00000111122 Pum2-001 protein_coding Mus_musculus 0 2109
ENSMUST00000111123 Pum2-002 protein_coding Mus_musculus 0 2109
ENSMUST00000168361 Pum2-201 protein_coding Mus_musculus 0 2082
ENSMUST00000163569 Pum2-006 protein_coding Mus_musculus 0 2082
ENSMUST00000171418 Pum2-011 protein_coding Mus_musculus 0 1007
ENSMUST00000170037 Pum2-007 nonsense_mediated_decay Mus_musculus 0 819
ENSMUST00000169750 Pum2-009 protein_coding Mus_musculus 0 712
ENSMUST00000105991 Pum1-201 protein_coding Mus_musculus 0 630
ENSMUST00000097864 Pum1-003 protein_coding Mus_musculus 0 630
ENSMUST00000105992 Pum1-202 protein_coding Mus_musculus 0 608
ENSMUST00000097862 Pum1-004 protein_coding Mus_musculus 0 608
ENSMUST00000030315 Pum1-001 protein_coding Mus_musculus 0 608
ENSMUST00000164818 Pum2-013 protein_coding Mus_musculus 0 597
ENSDART00000122308 pum1-201 protein_coding Danio_rerio 0 488
ENSMUST00000171608 Pum2-012 retained_intron Mus_musculus 0 486
ENSMUST00000163730 Pum2-014 protein_coding Mus_musculus 0 374

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