C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pumilio RNA-binding family member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000338086 PUM2-001 ENSG00000055917 9606 - 2:20248691-20327383 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000338086
Transcript ID Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000338086 2.978±0.00 1.879±0.08 8.399±0.00 4.917±0.00 4.907±1.75 3.090±2.24 5.191±0.00 4.901±0.00 4.607±0.00 3.142±1.48 4.213±0.10

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0006417 IEA regulation of translation
GO:0010494 ISS cytoplasmic stress granule
GO:0031965 IDA nuclear membrane
GO:0034063 IEA stress granule assembly
GO:0044822 IDA poly(A) RNA binding
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111123 Pum2-002 protein_coding Mus_musculus 0 5173
ENSMUST00000111122 Pum2-001 protein_coding Mus_musculus 0 5171
ENSMUST00000168361 Pum2-201 protein_coding Mus_musculus 0 5144
ENSMUST00000163569 Pum2-006 protein_coding Mus_musculus 0 5144
ENSMUST00000178015 Pum2-202 protein_coding Mus_musculus 0 2630
ENSMUST00000169089 Pum2-005 protein_coding Mus_musculus 0 2628
ENSMUST00000020915 Pum2-003 protein_coding Mus_musculus 0 2532
ENSMUST00000165293 Pum2-004 nonsense_mediated_decay Mus_musculus 0 2505
ENSMUST00000169750 Pum2-009 protein_coding Mus_musculus 0 1303
ENSMUST00000170037 Pum2-007 nonsense_mediated_decay Mus_musculus 0 1280
ENSMUST00000171418 Pum2-011 protein_coding Mus_musculus 0 1007
ENSMUST00000163730 Pum2-014 protein_coding Mus_musculus 0 961
ENSMUST00000105991 Pum1-201 protein_coding Mus_musculus 0 676
ENSMUST00000097864 Pum1-003 protein_coding Mus_musculus 0 676
ENSMUST00000105992 Pum1-202 protein_coding Mus_musculus 0 654
ENSMUST00000097862 Pum1-004 protein_coding Mus_musculus 0 654
ENSMUST00000030315 Pum1-001 protein_coding Mus_musculus 0 654
ENSMUST00000164818 Pum2-013 protein_coding Mus_musculus 0 595
ENSMUST00000166965 Pum2-010 protein_coding Mus_musculus 0 593
ENSDART00000122308 pum1-201 protein_coding Danio_rerio 0 507
ENSMUST00000171608 Pum2-012 retained_intron Mus_musculus 0 488
ENSMUST00000169177 Pum2-008 processed_transcript Mus_musculus 0 324

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