C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 13 (isopeptidase T-3)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000058056 USP13 9606 + 3:179652755-179789401 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000263966 USP13-001 179652755-179789401 protein_coding
  ENST00000482333 USP13-002 179653050-179757137 processed_transcript
  ENST00000496897 USP13-003 179653693-179784406 protein_coding
  ENST00000497155 USP13-006 179721564-179761151 protein_coding
  ENST00000497380 USP13-005 179653298-179708794 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263966ENST00000482333ENST00000496897
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263966 1.565±0.00 0.371±0.00 1.507±0.17 1.718±0.00 1.752±0.00 18.276±12.97 1.396±0.00 0.799±0.45 0.715±0.00 47.711±27.60 1.171±0.44 1.194±0.20 1.330±0.00
ENST00000482333 N/A N/A N/A N/A N/A N/A 1.188±0.00 N/A 0.860±0.00 13.932±0.00 N/A N/A N/A
ENST00000496897 N/A 0.846±0.00 0.807±0.00 2.303±0.00 0.328±0.00 7.598±0.00 1.721±0.00 1.592±0.00 2.544±0.00 11.116±0.00 2.238±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00049V CIL_00049V_0002 CGP 3:179604690-179789401
CIL_0003YE CIL_0003YE_0002 CGP 3:179652755-180037053

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004197 IMP cysteine-type endopeptidase activity
GO:0004221 IDA ubiquitin thiolesterase activity
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005515 IPI:IEA protein binding
GO:0006355 IMP regulation of transcription, DNA-templated
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0006914 IEA autophagy
GO:0008242 IEA omega peptidase activity
GO:0008270 IEA zinc ion binding
GO:0008283 IMP cell proliferation
GO:0010506 IDA regulation of autophagy
GO:0030318 TAS melanocyte differentiation
GO:0031625 IPI ubiquitin protein ligase binding
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0043130 IDA ubiquitin binding
GO:0050821 IDA protein stabilization
GO:0070536 IDA protein K63-linked deubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079198 usp13 ubiquitin specific peptidase 13 (isopeptidase T-3) protein_coding Danio_rerio
ENSMUSG00000056900 Usp13 ubiquitin specific peptidase 13 (isopeptidase T-3) protein_coding Mus_musculus

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