C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00049V_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000070824-ENSDARG00000079198 CGP 7955 6:29116793-29183004
GeneTranscriptPositionBiotype
ENSDARG00000070824 (ndufb5)
NADH dehydrogenase (ubiquinone) 1 beta subcomplex 5 		ENSDART00000104298 (ndufb5-001) 29116793-29123887 protein_coding
ENSDARG00000079198 (usp13)
ubiquitin specific peptidase 13 (isopeptidase T-3) 		ENSDART00000065293 (usp13-001) 29124782-29183004 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00049V_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000136521-ENSG00000058056 CGP 9606 3:179604690-179789401
GeneTranscriptPositionBiotype
ENSG00000058056 (USP13)
ubiquitin specific peptidase 13 (isopeptidase T-3) 		ENST00000263966 (USP13-001) 179652755-179789401 protein_coding
ENST00000482333 (USP13-002) 179653050-179757137 processed_transcript
ENST00000496897 (USP13-003) 179653693-179784406 protein_coding
ENST00000497155 (USP13-006) 179721564-179761151 protein_coding
ENST00000497380 (USP13-005) 179653298-179708794 nonsense_mediated_decay
ENSG00000136521 (NDUFB5)
NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa 		ENST00000259037 (NDUFB5-001) 179604702-179624497 protein_coding
ENST00000359944 (NDUFB5-003) 179604811-179624500 nonsense_mediated_decay
ENST00000468210 (NDUFB5-006) 179604809-179624376 nonsense_mediated_decay
ENST00000471112 (NDUFB5-016) 179616007-179624498 protein_coding
ENST00000472629 (NDUFB5-005) 179604801-179624235 protein_coding
ENST00000473500 (NDUFB5-012) 179604907-179624351 processed_transcript
ENST00000476587 (NDUFB5-011) 179616975-179624377 retained_intron
ENST00000477177 (NDUFB5-007) 179604816-179615408 retained_intron
ENST00000480374 (NDUFB5-009) 179604841-179624267 nonsense_mediated_decay
ENST00000482604 (NDUFB5-008) 179604826-179624091 protein_coding
ENST00000488002 (NDUFB5-004) 179604690-179617418 retained_intron
ENST00000491054 (NDUFB5-010) 179615206-179618522 retained_intron
ENST00000493716 (NDUFB5-014) 179618227-179624100 retained_intron
ENST00000493866 (NDUFB5-002) 179604791-179627647 protein_coding
ENST00000496904 (NDUFB5-013) 179604890-179618477 processed_transcript
ENST00000611971 (NDUFB5-201) 179604787-179624499 protein_coding
ENSG00000239096 (snoU13)
Small nucleolar RNA U13 		ENST00000459278 (snoU13.1-229) 179614775-179614878 snoRNA
ENSG00000243977 (RP11-473P24.2)
 ENST00000496255 (RP11-473P24.2-001) 179649494-179650200 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_00049V_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027673-ENSMUSG00000056900 CGP 10090 3:32736990-32938071
GeneTranscriptPositionBiotype
ENSMUSG00000037531 (Mrpl47)
mitochondrial ribosomal protein L47 		ENSMUST00000043966 (Mrpl47-001) 32725397-32737147 protein_coding
ENSMUST00000153564 (Mrpl47-002) 32727575-32732613 processed_transcript
ENSMUSG00000056900 (Usp13)
ubiquitin specific peptidase 13 (isopeptidase T-3) 		ENSMUST00000072312 (Usp13-001) 32817546-32938071 protein_coding
ENSMUST00000108228 (Usp13-002) 32817571-32933286 protein_coding
ENSMUST00000156769 (Usp13-003) 32915003-32933294 protein_coding
ENSMUST00000172481 (Usp13-004) 32817711-32915033 nonsense_mediated_decay
ENSMUSG00000081883 (Gm15574)
predicted gene 15574 		ENSMUST00000119937 (Gm15574-001) 32880011-32880608 unprocessed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00049V_0001ENSDARG00000070824ENSDART00000104298ENSDARG00000079198ENSDART00000065293CIL_00049V_0002ENSG00000058056ENST00000263966ENST00000482333ENST00000496897ENST00000497155ENST00000497380ENSG00000136521ENST00000259037ENST00000359944ENST00000468210ENST00000471112ENST00000472629ENST00000473500ENST00000476587ENST00000477177ENST00000480374ENST00000482604ENST00000488002ENST00000491054ENST00000493716ENST00000493866ENST00000496904ENST00000611971ENSG00000239096ENST00000459278ENSG00000243977ENST00000496255CIL_00049V_0003ENSMUSG00000037531ENSMUST00000043966ENSMUST00000153564ENSMUSG00000056900ENSMUST00000072312ENSMUST00000108228ENSMUST00000156769ENSMUST00000172481ENSMUSG00000081883ENSMUST00000119937
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00049V_0001ENSDARG00000070824ENSDART00000104298ENSDARG00000079198ENSDART00000065293CIL_00049V_0002ENSG00000058056ENST00000263966ENST00000482333ENST00000496897ENSG00000136521ENST00000259037ENST00000359944ENST00000468210ENST00000472629ENST00000476587ENST00000480374ENST00000482604ENST00000493866ENST00000611971ENSG00000239096ENST00000459278ENSG00000243977ENST00000496255CIL_00049V_0003ENSMUSG00000037531ENSMUST00000043966ENSMUSG00000056900ENSMUST00000072312ENSMUST00000108228ENSMUST00000156769ENSMUST00000172481ENSMUSG00000081883ENSMUST00000119937
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000070824 ENSDART00000104298 N/A N/A N/A 63.951±27.02 N/A N/A 75.778±79.12 28.761±0.00 5.967±0.00 N/A 107.106±0.00 N/A N/A N/A
ENSDARG00000079198 ENSDART00000065293 N/A N/A N/A 2.452±1.04 N/A N/A 50.958±20.79 5.256±1.58 0.030±0.00 N/A 36.011±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000058056 ENST00000263966 N/A 1.565±0.00 0.371±0.00 1.507±0.17 1.718±0.00 1.752±0.00 18.276±12.97 1.396±0.00 0.799±0.45 0.715±0.00 47.711±27.60 1.171±0.44 1.194±0.20 1.330±0.00
ENST00000482333 N/A N/A N/A N/A N/A N/A N/A 1.188±0.00 N/A 0.860±0.00 13.932±0.00 N/A N/A N/A
ENST00000496897 N/A N/A 0.846±0.00 0.807±0.00 2.303±0.00 0.328±0.00 7.598±0.00 1.721±0.00 1.592±0.00 2.544±0.00 11.116±0.00 2.238±0.00 N/A N/A
ENST00000497155 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497380 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000136521 ENST00000259037 N/A N/A 4.953±0.00 11.646±0.00 8.763±0.00 6.789±0.00 31.089±10.50 14.465±0.19 11.454±4.80 7.961±1.85 8.463±5.32 25.969±13.33 35.271±6.01 26.590±1.92
ENST00000359944 N/A 7.134±0.00 N/A N/A 9.547±0.00 N/A N/A 13.093±0.00 N/A N/A 3.771±0.00 6.166±1.35 N/A N/A
ENST00000468210 11.605±0.00 7.676±0.00 N/A 27.479±0.00 25.372±0.00 26.953±0.00 N/A N/A N/A N/A 9.131±0.00 N/A 9.426±0.00 31.255±0.00
ENST00000471112 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472629 10.824±0.00 7.403±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.387±0.00
ENST00000473500 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476587 N/A N/A N/A N/A N/A N/A 19.246±0.00 35.104±0.00 12.401±0.00 8.674±0.00 12.217±0.00 31.879±0.00 30.283±0.00 29.622±0.00
ENST00000477177 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480374 N/A N/A N/A N/A N/A 21.108±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482604 N/A N/A N/A N/A 21.080±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491054 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493716 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493866 1.668±0.00 1.787±0.00 0.825±0.00 7.700±0.00 2.405±1.37 0.544±0.00 3.134±0.57 1.760±0.00 1.089±0.00 0.722±0.00 1.634±0.00 0.865±0.00 N/A N/A
ENST00000496904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611971 11.943±0.00 N/A N/A 15.645±3.39 13.478±0.00 8.459±6.31 N/A 11.321±0.00 N/A N/A 7.827±0.85 N/A N/A N/A
ENSG00000239096 ENST00000459278 N/A 0.215±0.00 N/A N/A 0.216±0.00 N/A N/A 1.048±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000243977 ENST00000496255 0.047±0.00 0.394±0.00 N/A 0.133±0.00 0.025±0.00 0.023±0.00 0.093±0.00 0.102±0.00 0.066±0.00 0.307±0.00 0.066±0.00 0.186±0.00 N/A 0.105±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000037531 ENSMUST00000043966 N/A N/A 3.924±0.09 4.218±1.39 6.343±0.00 N/A N/A N/A 5.938±1.71 2.754±0.00 N/A 4.389±0.54 5.058±1.28 5.420±1.53
ENSMUST00000153564 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000056900 ENSMUST00000072312 1.159±0.69 N/A 0.839±0.09 2.113±0.73 2.806±2.55 0.166±0.00 22.059±3.19 0.109±0.04 0.029±0.03 1.388±0.43 44.784±4.38 0.613±0.22 0.303±0.15 0.013±0.00
ENSMUST00000108228 1.525±0.91 0.395±0.00 N/A N/A 1.020±0.79 0.846±0.00 7.740±0.00 0.179±0.07 0.073±0.04 0.689±0.25 18.685±1.84 0.584±0.13 0.293±0.07 0.039±0.00
ENSMUST00000156769 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.494±0.00 0.062±0.01
ENSMUST00000172481 N/A N/A N/A N/A N/A N/A N/A N/A 0.021±0.00 N/A N/A N/A 0.399±0.03 0.040±0.02
ENSMUSG00000081883 ENSMUST00000119937 0.163±0.02 N/A N/A 0.060±0.00 0.368±0.06 0.485±0.02 0.136±0.01 N/A 0.025±0.00 N/A 0.152±0.00 0.656±0.53 0.203±0.10 N/A

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