C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 13 (isopeptidase T-3)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000056900 Usp13 10090 + 3:32817546-32938071 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000072312 Usp13-001 32817546-32938071 protein_coding
  ENSMUST00000108228 Usp13-002 32817571-32933286 protein_coding
  ENSMUST00000156769 Usp13-003 32915003-32933294 protein_coding
  ENSMUST00000172481 Usp13-004 32817711-32915033 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000072312ENSMUST00000108228ENSMUST00000156769ENSMUST00000172481
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000072312 1.159±0.69 N/A 0.839±0.09 2.113±0.73 2.806±2.55 0.166±0.00 22.059±3.19 0.109±0.04 0.029±0.03 1.388±0.43 44.784±4.38 0.613±0.22 0.303±0.15 0.013±0.00
ENSMUST00000108228 1.525±0.91 0.395±0.00 N/A N/A 1.020±0.79 0.846±0.00 7.740±0.00 0.179±0.07 0.073±0.04 0.689±0.25 18.685±1.84 0.584±0.13 0.293±0.07 0.039±0.00
ENSMUST00000156769 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.494±0.00 0.062±0.01
ENSMUST00000172481 N/A N/A N/A N/A N/A N/A N/A N/A 0.021±0.00 N/A N/A N/A 0.399±0.03 0.040±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00049V CIL_00049V_0003 CGP 3:32736990-32938071
CIL_0003YE CIL_0003YE_0003 CGP 3:32817546-33143247

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004197 ISS cysteine-type endopeptidase activity
GO:0004221 ISS ubiquitin thiolesterase activity
GO:0004843 ISS ubiquitin-specific protease activity
GO:0005575 ND cellular_component
GO:0006355 ISS regulation of transcription, DNA-templated
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0006914 IEA autophagy
GO:0008234 IEA cysteine-type peptidase activity
GO:0008242 IEA omega peptidase activity
GO:0008270 IEA zinc ion binding
GO:0008283 ISS cell proliferation
GO:0010506 ISS regulation of autophagy
GO:0031625 IEA ubiquitin protein ligase binding
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0043130 ISS ubiquitin binding
GO:0050821 ISS protein stabilization
GO:0070536 ISS protein K63-linked deubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079198 usp13 ubiquitin specific peptidase 13 (isopeptidase T-3) protein_coding Danio_rerio
ENSG00000058056 USP13 ubiquitin specific peptidase 13 (isopeptidase T-3) protein_coding Homo_sapiens

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