C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003YE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000079198-ENSDARG00000022518 CGP 7955 6:29124782-29326065
GeneTranscriptPositionBiotype
ENSDARG00000022518 (pex5la)
peroxisomal biogenesis factor 5-like a 		ENSDART00000104293 (pex5la-001) 29190729-29326065 protein_coding
ENSDART00000143504 (pex5la-002) 29211757-29227928 retained_intron
ENSDARG00000079198 (usp13)
ubiquitin specific peptidase 13 (isopeptidase T-3) 		ENSDART00000065293 (usp13-001) 29124782-29183004 protein_coding
CIL_0003YE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000058056-ENSG00000114757 CGP 9606 3:179652755-180037053
GeneTranscriptPositionBiotype
ENSG00000058056 (USP13)
ubiquitin specific peptidase 13 (isopeptidase T-3) 		ENST00000263966 (USP13-001) 179652755-179789401 protein_coding
ENST00000482333 (USP13-002) 179653050-179757137 processed_transcript
ENST00000496897 (USP13-003) 179653693-179784406 protein_coding
ENST00000497155 (USP13-006) 179721564-179761151 protein_coding
ENST00000497380 (USP13-005) 179653298-179708794 nonsense_mediated_decay
ENSG00000114757 (PEX5L)
peroxisomal biogenesis factor 5-like 		ENST00000263962 (PEX5L-005) 179801056-180036770 protein_coding
ENST00000392649 (PEX5L-201) 179794958-179898323 protein_coding
ENST00000461537 (PEX5L-015) 179809594-179820555 processed_transcript
ENST00000463761 (PEX5L-011) 179875444-179974211 protein_coding
ENST00000464614 (PEX5L-008) 179801739-179974078 protein_coding
ENST00000465751 (PEX5L-004) 179801817-180036926 protein_coding
ENST00000467440 (PEX5L-009) 179801649-179888191 processed_transcript
ENST00000467460 (PEX5L-001) 179794958-180036930 protein_coding
ENST00000468741 (PEX5L-006) 179801518-179974259 protein_coding
ENST00000469198 (PEX5L-017) 179875367-179973252 protein_coding
ENST00000472994 (PEX5L-003) 179801657-180036959 protein_coding
ENST00000474909 (PEX5L-010) 179900673-180037035 processed_transcript
ENST00000476138 (PEX5L-007) 179801523-179974211 protein_coding
ENST00000477829 (PEX5L-016) 179809573-179820091 retained_intron
ENST00000485199 (PEX5L-002) 179801066-180037053 protein_coding
ENST00000487198 (PEX5L-012) 179879966-179974119 processed_transcript
ENST00000491640 (PEX5L-014) 179874373-179895680 protein_coding
ENST00000496721 (PEX5L-013) 179859097-179896174 protein_coding
ENSG00000243799 (PEX5L-AS1)
PEX5L antisense RNA 1 		ENST00000466064 (PEX5L-AS1-001) 179875376-179881609 antisense
ENSG00000244302 (PEX5L-AS2)
PEX5L antisense RNA 2 		ENST00000462801 (PEX5L-AS2-001) 179898229-179921895 antisense
ENSG00000270178 (RP11-494H4.3)
 ENST00000602704 (RP11-494H4.3-001) 179804063-179804366 lincRNA
CIL_0003YE_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000056900-ENSMUSG00000027674 CGP 10090 3:32817546-33143247
GeneTranscriptPositionBiotype
ENSMUSG00000027674 (Pex5l)
peroxisomal biogenesis factor 5-like 		ENSMUST00000078226 (Pex5l-001) 32949634-33083029 protein_coding
ENSMUST00000108219 (Pex5l-003) 32955866-33143247 protein_coding
ENSMUST00000108221 (Pex5l-006) 32950630-32985079 protein_coding
ENSMUST00000108224 (Pex5l-004) 32949954-33083035 protein_coding
ENSMUST00000108225 (Pex5l-201) 32949408-33082068 protein_coding
ENSMUST00000108226 (Pex5l-002) 32949954-33143082 protein_coding
ENSMUST00000123218 (Pex5l-007) 32954337-32956357 retained_intron
ENSMUST00000155264 (Pex5l-005) 33131566-33143076 processed_transcript
ENSMUSG00000056900 (Usp13)
ubiquitin specific peptidase 13 (isopeptidase T-3) 		ENSMUST00000072312 (Usp13-001) 32817546-32938071 protein_coding
ENSMUST00000108228 (Usp13-002) 32817571-32933286 protein_coding
ENSMUST00000156769 (Usp13-003) 32915003-32933294 protein_coding
ENSMUST00000172481 (Usp13-004) 32817711-32915033 nonsense_mediated_decay
ENSMUSG00000081883 (Gm15574)
predicted gene 15574 		ENSMUST00000119937 (Gm15574-001) 32880011-32880608 unprocessed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003YE_0001ENSDARG00000022518ENSDART00000104293ENSDART00000143504ENSDARG00000079198ENSDART00000065293CIL_0003YE_0002ENSG00000058056ENST00000263966ENST00000482333ENST00000496897ENST00000497155ENST00000497380ENSG00000114757ENST00000263962ENST00000392649ENST00000461537ENST00000463761ENST00000464614ENST00000465751ENST00000467440ENST00000467460ENST00000468741ENST00000469198ENST00000472994ENST00000474909ENST00000476138ENST00000477829ENST00000485199ENST00000487198ENST00000491640ENST00000496721ENSG00000243799ENST00000466064ENSG00000244302ENST00000462801ENSG00000270178ENST00000602704CIL_0003YE_0003ENSMUSG00000027674ENSMUST00000078226ENSMUST00000108219ENSMUST00000108221ENSMUST00000108224ENSMUST00000108225ENSMUST00000108226ENSMUST00000123218ENSMUST00000155264ENSMUSG00000056900ENSMUST00000072312ENSMUST00000108228ENSMUST00000156769ENSMUST00000172481ENSMUSG00000081883ENSMUST00000119937
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003YE_0001ENSDARG00000022518ENSDART00000104293ENSDART00000143504ENSDARG00000079198ENSDART00000065293CIL_0003YE_0002ENSG00000058056ENST00000263966ENST00000482333ENST00000496897ENSG00000114757ENST00000263962ENST00000392649ENST00000467440ENST00000467460ENST00000472994ENST00000476138ENST00000485199ENST00000487198ENST00000496721ENSG00000243799ENST00000466064ENSG00000244302ENST00000462801ENSG00000270178ENST00000602704CIL_0003YE_0003ENSMUSG00000027674ENSMUST00000078226ENSMUST00000108219ENSMUST00000108221ENSMUST00000108224ENSMUST00000108225ENSMUST00000108226ENSMUST00000123218ENSMUST00000155264ENSMUSG00000056900ENSMUST00000072312ENSMUST00000108228ENSMUST00000156769ENSMUST00000172481ENSMUSG00000081883ENSMUST00000119937
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000022518 ENSDART00000104293 N/A N/A N/A 0.971±0.67 N/A N/A 0.242±0.03 0.056±0.02 N/A N/A 0.119±0.00 N/A N/A N/A
ENSDART00000143504 N/A N/A N/A N/A N/A N/A N/A 2.697±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000079198 ENSDART00000065293 N/A N/A N/A 2.452±1.04 N/A N/A 50.958±20.79 5.256±1.58 0.030±0.00 N/A 36.011±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000058056 ENST00000263966 N/A 1.565±0.00 0.371±0.00 1.507±0.17 1.718±0.00 1.752±0.00 18.276±12.97 1.396±0.00 0.799±0.45 0.715±0.00 47.711±27.60 1.171±0.44 1.194±0.20 1.330±0.00
ENST00000482333 N/A N/A N/A N/A N/A N/A N/A 1.188±0.00 N/A 0.860±0.00 13.932±0.00 N/A N/A N/A
ENST00000496897 N/A N/A 0.846±0.00 0.807±0.00 2.303±0.00 0.328±0.00 7.598±0.00 1.721±0.00 1.592±0.00 2.544±0.00 11.116±0.00 2.238±0.00 N/A N/A
ENST00000497155 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497380 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000114757 ENST00000263962 N/A N/A N/A N/A N/A N/A 0.034±0.00 N/A N/A 0.038±0.00 N/A 0.054±0.04 N/A 1.339±0.44
ENST00000392649 N/A 0.066±0.00 N/A N/A 0.015±0.00 0.009±0.00 N/A 0.021±0.00 0.008±0.00 0.085±0.00 N/A N/A 0.006±0.00 N/A
ENST00000461537 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463761 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464614 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465751 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467440 0.041±0.00 N/A N/A N/A N/A 0.094±0.00 0.181±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000467460 N/A N/A N/A 3.604±1.04 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468741 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469198 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472994 N/A N/A N/A 12.496±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474909 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.070±0.00 N/A N/A
ENST00000477829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485199 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.032±0.00 N/A N/A N/A N/A
ENST00000487198 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.745±0.00 N/A N/A N/A N/A
ENST00000491640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496721 N/A N/A N/A N/A 0.075±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000243799 ENST00000466064 0.104±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000244302 ENST00000462801 N/A 0.257±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 21.544±8.56
ENSG00000270178 ENST00000602704 0.116±0.00 N/A 0.368±0.00 0.666±0.42 0.136±0.00 N/A 0.256±0.00 0.035±0.00 0.192±0.00 N/A 1.118±0.00 0.150±0.00 N/A 0.276±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027674 ENSMUST00000078226 0.094±0.01 N/A 1.734±0.00 N/A 0.237±0.09 N/A N/A 0.073±0.00 N/A N/A 0.068±0.00 0.059±0.00 N/A N/A
ENSMUST00000108219 0.335±0.25 0.608±0.33 2.740±0.45 0.549±0.00 0.165±0.00 0.701±0.14 0.047±0.00 0.143±0.06 0.030±0.00 0.040±0.00 0.041±0.01 0.346±0.15 1.017±0.68 N/A
ENSMUST00000108221 N/A N/A N/A N/A 0.477±0.07 2.914±0.00 0.153±0.01 0.501±0.21 0.054±0.04 0.124±0.01 0.081±0.00 0.537±0.20 N/A 63.267±7.92
ENSMUST00000108224 0.275±0.05 N/A N/A N/A 0.356±0.22 0.937±0.00 N/A 0.075±0.02 0.029±0.01 0.085±0.00 0.113±0.03 N/A N/A N/A
ENSMUST00000108225 0.100±0.00 N/A N/A 10.363±9.98 N/A N/A 0.072±0.00 0.095±0.01 N/A 0.112±0.01 0.043±0.01 0.094±0.00 0.688±0.50 N/A
ENSMUST00000108226 0.690±0.40 0.685±0.22 4.644±0.85 1.006±0.13 0.251±0.05 0.941±0.53 0.066±0.00 0.137±0.04 0.019±0.01 0.153±0.06 0.087±0.07 0.410±0.30 1.138±0.78 N/A
ENSMUST00000123218 N/A N/A N/A N/A N/A N/A 0.247±0.09 N/A 0.048±0.03 N/A 0.127±0.02 0.145±0.00 N/A N/A
ENSMUST00000155264 N/A 2.940±1.12 N/A N/A N/A N/A N/A N/A 0.074±0.00 N/A N/A 0.985±0.00 N/A N/A
ENSMUSG00000056900 ENSMUST00000072312 1.159±0.69 N/A 0.839±0.09 2.113±0.73 2.806±2.55 0.166±0.00 22.059±3.19 0.109±0.04 0.029±0.03 1.388±0.43 44.784±4.38 0.613±0.22 0.303±0.15 0.013±0.00
ENSMUST00000108228 1.525±0.91 0.395±0.00 N/A N/A 1.020±0.79 0.846±0.00 7.740±0.00 0.179±0.07 0.073±0.04 0.689±0.25 18.685±1.84 0.584±0.13 0.293±0.07 0.039±0.00
ENSMUST00000156769 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.494±0.00 0.062±0.01
ENSMUST00000172481 N/A N/A N/A N/A N/A N/A N/A N/A 0.021±0.00 N/A N/A N/A 0.399±0.03 0.040±0.02
ENSMUSG00000081883 ENSMUST00000119937 0.163±0.02 N/A N/A 0.060±0.00 0.368±0.06 0.485±0.02 0.136±0.01 N/A 0.025±0.00 N/A 0.152±0.00 0.656±0.53 0.203±0.10 N/A

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