C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATPase, class VI, type 11B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000058063 ATP11B 9606 + 3:182793500-182921635 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000323116 ATP11B-001 182793500-182921635 protein_coding
  ENST00000466758 ATP11B-006 182873966-182919063 nonsense_mediated_decay
  ENST00000475636 ATP11B-008 182898685-182913978 processed_transcript
  ENST00000482070 ATP11B-009 182879539-182897325 protein_coding
  ENST00000482794 ATP11B-010 182833673-182848557 processed_transcript
  ENST00000484691 ATP11B-011 182898607-182914096 protein_coding
  ENST00000490303 ATP11B-005 182865527-182914103 retained_intron
  ENST00000491699 ATP11B-007 182897302-182915249 protein_coding
  ENST00000493826 ATP11B-002 182793503-182836624 protein_coding
  ENST00000498086 ATP11B-004 182837117-182918341 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000323116ENST00000490303ENST00000491699ENST00000498086
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000323116 N/A N/A 1.720±0.48 5.701±1.70 5.831±0.00 N/A 2.415±0.00 N/A 4.288±2.50 1.857±0.00 6.460±3.47 0.877±0.17 3.763±0.00
ENST00000490303 N/A N/A N/A N/A N/A 1.823±0.00 N/A N/A N/A 0.807±0.00 10.896±0.00 0.978±0.00 N/A
ENST00000491699 N/A 2.847±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 16.398±0.00 N/A N/A
ENST00000498086 1.961±0.00 N/A N/A N/A N/A 1.227±0.00 N/A 4.678±0.00 N/A 0.660±0.00 N/A N/A 6.518±1.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005FX CIL_0005FX_0001 CGP 3:181711924-182921635
CIL_0007U2 CIL_0007U2_0001 VISTA 3:182208439-182810171
CIL_0005FW CIL_0005FW_0001 CGP 3:182793500-182985953

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000287 IEA magnesium ion binding
GO:0004012 TAS:IEA phospholipid-translocating ATPase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005637 NAS nuclear inner membrane
GO:0005783 IDA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0005886 TAS plasma membrane
GO:0006811 NAS ion transport
GO:0008152 IEA metabolic process
GO:0015075 NAS ion transmembrane transporter activity
GO:0015914 IEA phospholipid transport
GO:0015917 TAS aminophospholipid transport
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0019829 IEA cation-transporting ATPase activity
GO:0034220 TAS ion transmembrane transport
GO:0045332 NAS phospholipid translocation
GO:0046872 IEA metal ion binding
GO:0055037 IDA recycling endosome
GO:0055085 TAS transmembrane transport
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054028 atp11b ATPase, class VI, type 11B protein_coding Danio_rerio
ENSMUSG00000037400 Atp11b ATPase, class VI, type 11B protein_coding Mus_musculus

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