C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005FX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000181449-ENSG00000058063 CGP 9606 3:181711924-182921635
GeneTranscriptPositionBiotype
ENSG00000058063 (ATP11B)
ATPase, class VI, type 11B 		ENST00000323116 (ATP11B-001) 182793500-182921635 protein_coding
ENST00000466758 (ATP11B-006) 182873966-182919063 nonsense_mediated_decay
ENST00000475636 (ATP11B-008) 182898685-182913978 processed_transcript
ENST00000482070 (ATP11B-009) 182879539-182897325 protein_coding
ENST00000482794 (ATP11B-010) 182833673-182848557 processed_transcript
ENST00000484691 (ATP11B-011) 182898607-182914096 protein_coding
ENST00000490303 (ATP11B-005) 182865527-182914103 retained_intron
ENST00000491699 (ATP11B-007) 182897302-182915249 protein_coding
ENST00000493826 (ATP11B-002) 182793503-182836624 protein_coding
ENST00000498086 (ATP11B-004) 182837117-182918341 protein_coding
ENSG00000181449 (SOX2)
SRY (sex determining region Y)-box 2 		ENST00000325404 (SOX2-001) 181711924-181714436 protein_coding
ENSG00000213155 (RP11-252O18.3)
 ENST00000462177 (RP11-252O18.3-001) 181866351-181867154 processed_pseudogene
ENSG00000228766 (RPL7L1P8)
ribosomal protein L7-like 1 pseudogene 8 		ENST00000469911 (RPL7L1P8-001) 182610674-182611414 processed_pseudogene
ENSG00000238837 (RP11-646E18.2)
 ENST00000492416 (RP11-646E18.2-001) 182644214-182655880 lincRNA
ENSG00000239805 (RP11-252O18.2)
 ENST00000468802 (RP11-252O18.2-001) 181847526-181847885 processed_pseudogene
ENSG00000240063 (RP11-225N10.1)
 ENST00000488882 (RP11-225N10.1-001) 182783236-182793394 antisense
ENSG00000242012 (RP11-338L18.1)
 ENST00000473893 (RP11-338L18.1-001) 182365147-182368256 lincRNA
ENSG00000242512 (LINC01206)
long intergenic non-protein coding RNA 1206 		ENST00000467313 (LINC01206-004) 181952374-181973345 lincRNA
ENST00000474045 (LINC01206-002) 181952386-182003122 lincRNA
ENST00000476815 (LINC01206-005) 181952404-181971879 lincRNA
ENST00000482787 (LINC01206-001) 181952343-182010678 lincRNA
ENST00000490001 (LINC01206-003) 181952373-182000262 lincRNA
ENST00000596820 (LINC01206-007) 181952370-181972497 lincRNA
ENST00000600750 (LINC01206-006) 181952349-181972497 lincRNA
ENST00000608042 (LINC01206-009) 181971211-181973290 lincRNA
ENST00000608102 (LINC01206-010) 181971214-181972470 lincRNA
ENST00000608336 (LINC01206-012) 181967323-181972438 lincRNA
ENST00000609052 (LINC01206-013) 181965983-181972492 lincRNA
ENST00000609168 (LINC01206-008) 181971229-181973335 lincRNA
ENST00000609852 (LINC01206-011) 181967858-181972470 lincRNA
ENST00000610910 (LINC01206-016) 181952390-181963521 lincRNA
ENST00000614303 (LINC01206-014) 181952378-181953734 lincRNA
ENST00000619662 (LINC01206-015) 181952385-181957292 lincRNA
ENSG00000244199 (RP11-139K4.4)
 ENST00000498782 (RP11-139K4.4-001) 182460417-182461072 processed_pseudogene
ENSG00000244247 (RP11-139K4.2)
 ENST00000489016 (RP11-139K4.2-001) 182498264-182507124 lincRNA
ENSG00000252257 (RN7SKP265)
RNA, 7SK small nuclear pseudogene 265 		ENST00000516448 (RN7SKP265-201) 181968459-181968681 misc_RNA
ENSG00000260377 (RP11-646E18.4)
 ENST00000565024 (RP11-646E18.4-001) 182739669-182740848 lincRNA
ENSG00000266317 (RN7SL703P)
RNA, 7SL, cytoplasmic 703, pseudogene 		ENST00000578485 (RN7SL703P-201) 181813401-181813702 misc_RNA
ENSG00000270554 (RP11-225N10.3)
 ENST00000604149 (RP11-225N10.3-001) 182843521-182844619 processed_pseudogene
ENSG00000273261 (RP11-531F16.4)
 ENST00000608000 (RP11-531F16.4-001) 182921240-182921938 antisense

Homo sapiens Ensembl (GRCh38)

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Transcripts
Structures from Ensembl
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CIL_0005FX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000074637-ENSMUSG00000037400 CGP 10090 3:34650405-35856274
GeneTranscriptPositionBiotype
ENSMUSG00000037400 (Atp11b)
ATPase, class VI, type 11B 		ENSMUST00000029257 (Atp11b-001) 35754134-35856274 protein_coding
ENSMUST00000108186 (Atp11b-002) 35754134-35829688 protein_coding
ENSMUST00000125214 (Atp11b-004) 35838753-35856271 retained_intron
ENSMUST00000134260 (Atp11b-006) 35838721-35856271 retained_intron
ENSMUST00000138896 (Atp11b-007) 35807842-35810281 processed_transcript
ENSMUST00000141468 (Atp11b-005) 35789606-35856274 protein_coding
ENSMUST00000142037 (Atp11b-003) 35754134-35838280 retained_intron
ENSMUSG00000074637 (Sox2)
SRY (sex determining region Y)-box 2 		ENSMUST00000099151 (Sox2-001) 34650405-34652461 protein_coding
ENSMUSG00000090828 (Sox2ot)
 ENSMUST00000163261 (Sox2ot-001) 34560381-34677993 sense_overlapping
ENSMUST00000168995 (Sox2ot-003) 34638252-34680851 sense_overlapping
ENSMUST00000170492 (Sox2ot-002) 34637169-34677993 sense_overlapping
ENSMUST00000172560 (Sox2ot-007) 34196751-34638483 sense_overlapping
ENSMUST00000172673 (Sox2ot-012) 34560392-34638446 sense_overlapping
ENSMUST00000172703 (Sox2ot-015) 34638504-34682619 sense_overlapping
ENSMUST00000172725 (Sox2ot-006) 34104438-34638408 sense_overlapping
ENSMUST00000172935 (Sox2ot-010) 34560328-34675854 sense_overlapping
ENSMUST00000173219 (Sox2ot-011) 34560388-34573862 sense_overlapping
ENSMUST00000173276 (Sox2ot-016) 34656437-34676146 sense_overlapping
ENSMUST00000173365 (Sox2ot-013) 34589952-34675994 sense_overlapping
ENSMUST00000173431 (Sox2ot-004) 34665243-34677995 sense_overlapping
ENSMUST00000173845 (Sox2ot-009) 34104458-34676030 sense_overlapping
ENSMUST00000174087 (Sox2ot-005) 34638297-34680814 sense_overlapping
ENSMUST00000174136 (Sox2ot-014) 34638174-34675897 sense_overlapping
ENSMUST00000174785 (Sox2ot-008) 34196864-34508942 sense_overlapping

Mus musculus Ensembl (GRCm38)

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005FX_0001ENSG00000058063ENST00000323116ENST00000466758ENST00000475636ENST00000482070ENST00000482794ENST00000484691ENST00000490303ENST00000491699ENST00000493826ENST00000498086ENSG00000181449ENST00000325404ENSG00000213155ENST00000462177ENSG00000228766ENST00000469911ENSG00000238837ENST00000492416ENSG00000239805ENST00000468802ENSG00000240063ENST00000488882ENSG00000242012ENST00000473893ENSG00000242512ENST00000467313ENST00000474045ENST00000476815ENST00000482787ENST00000490001ENST00000596820ENST00000600750ENST00000608042ENST00000608102ENST00000608336ENST00000609052ENST00000609168ENST00000609852ENST00000610910ENST00000614303ENST00000619662ENSG00000244199ENST00000498782ENSG00000244247ENST00000489016ENSG00000252257ENST00000516448ENSG00000260377ENST00000565024ENSG00000266317ENST00000578485ENSG00000270554ENST00000604149ENSG00000273261ENST00000608000CIL_0005FX_0002ENSMUSG00000037400ENSMUST00000029257ENSMUST00000108186ENSMUST00000125214ENSMUST00000134260ENSMUST00000138896ENSMUST00000141468ENSMUST00000142037ENSMUSG00000074637ENSMUST00000099151ENSMUSG00000090828ENSMUST00000163261ENSMUST00000168995ENSMUST00000170492ENSMUST00000172560ENSMUST00000172673ENSMUST00000172703ENSMUST00000172725ENSMUST00000172935ENSMUST00000173219ENSMUST00000173276ENSMUST00000173365ENSMUST00000173431ENSMUST00000173845ENSMUST00000174087ENSMUST00000174136ENSMUST00000174785
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000058063 ENST00000323116 N/A N/A N/A 1.720±0.48 5.701±1.70 5.831±0.00 N/A 2.415±0.00 N/A 4.288±2.50 1.857±0.00 6.460±3.47 0.877±0.17 3.763±0.00
ENST00000466758 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482070 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482794 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484691 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490303 N/A N/A N/A N/A N/A N/A 1.823±0.00 N/A N/A N/A 0.807±0.00 10.896±0.00 0.978±0.00 N/A
ENST00000491699 N/A N/A 2.847±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 16.398±0.00 N/A N/A
ENST00000493826 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498086 N/A 1.961±0.00 N/A N/A N/A N/A 1.227±0.00 N/A 4.678±0.00 N/A 0.660±0.00 N/A N/A 6.518±1.66
ENSG00000181449 ENST00000325404 0.216±0.00 0.322±0.00 0.036±0.00 14.461±7.04 0.047±0.03 5.298±5.27 0.135±0.00 0.037±0.00 0.161±0.14 2.021±1.06 0.029±0.00 4.895±4.39 0.060±0.00 0.599±0.12
ENSG00000213155 ENST00000462177 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.072±0.00
ENSG00000228766 ENST00000469911 0.018±0.00 0.019±0.00 N/A 0.068±0.01 0.019±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000238837 ENST00000492416 N/A 0.057±0.00 N/A 0.062±0.00 0.089±0.00 0.027±0.00 N/A 0.088±0.00 0.505±0.00 0.349±0.00 N/A 0.070±0.00 N/A 0.048±0.02
ENSG00000239805 ENST00000468802 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.166±0.00
ENSG00000240063 ENST00000488882 0.006±0.00 0.045±0.00 N/A 0.041±0.00 0.016±0.00 0.030±0.00 0.043±0.00 0.011±0.00 0.019±0.00 0.124±0.00 N/A 0.019±0.00 0.020±0.00 0.226±0.06
ENSG00000242012 ENST00000473893 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.593±0.00
ENSG00000242512 ENST00000467313 N/A N/A N/A N/A 0.054±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474045 N/A 0.045±0.00 N/A N/A N/A 0.005±0.00 0.023±0.00 0.022±0.00 N/A N/A N/A 0.014±0.00 N/A N/A
ENST00000476815 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482787 0.009±0.00 N/A N/A 0.011±0.00 N/A 0.017±0.00 0.003±0.00 N/A N/A N/A N/A 0.004±0.00 N/A 2.867±2.36
ENST00000490001 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000596820 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000600750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000608042 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000608102 0.059±0.00 0.058±0.00 N/A 0.066±0.00 N/A N/A 0.013±0.00 N/A 0.017±0.00 0.035±0.00 N/A N/A N/A N/A
ENST00000608336 N/A N/A N/A N/A N/A N/A 0.161±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000609052 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609168 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609852 N/A N/A N/A N/A N/A N/A N/A N/A 0.024±0.00 N/A N/A N/A N/A N/A
ENST00000610910 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614303 0.171±0.00 0.353±0.00 N/A 0.185±0.00 0.045±0.00 0.102±0.00 0.021±0.00 0.315±0.00 0.020±0.00 N/A 0.117±0.00 N/A N/A N/A
ENST00000619662 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000244199 ENST00000498782 N/A 0.017±0.00 N/A 0.017±0.00 N/A N/A N/A 0.017±0.00 N/A N/A N/A N/A N/A 0.116±0.00
ENSG00000244247 ENST00000489016 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.481±0.00
ENSG00000252257 ENST00000516448 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.053±0.00
ENSG00000260377 ENST00000565024 0.044±0.00 0.151±0.00 N/A 0.047±0.00 0.070±0.00 0.042±0.00 N/A 0.012±0.00 0.022±0.00 0.099±0.04 0.032±0.00 0.043±0.03 N/A 0.009±0.00
ENSG00000266317 ENST00000578485 N/A 0.045±0.00 N/A N/A N/A 0.719±0.00 N/A N/A N/A N/A N/A N/A N/A 0.041±0.00
ENSG00000270554 ENST00000604149 0.074±0.00 N/A 0.057±0.00 0.081±0.00 0.612±0.58 N/A 0.186±0.00 0.436±0.00 0.092±0.00 0.221±0.13 0.139±0.00 0.036±0.03 N/A 0.030±0.02
ENSG00000273261 ENST00000608000 N/A N/A N/A N/A N/A 6.418±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000037400 ENSMUST00000029257 5.335±1.97 5.713±1.41 5.714±0.20 2.426±0.00 5.915±2.17 16.815±2.73 2.607±0.37 5.572±0.93 4.913±0.89 7.169±0.72 2.173±0.86 6.809±1.91 8.140±1.35 6.158±2.11
ENSMUST00000108186 N/A 3.383±0.71 N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.177±0.00 10.006±2.83 6.259±0.00
ENSMUST00000125214 5.629±0.75 N/A 11.746±0.12 9.137±0.00 3.414±0.47 6.572±0.00 1.745±0.28 4.699±0.86 5.468±3.15 4.848±0.66 2.115±0.50 4.099±0.75 8.849±1.00 8.380±1.50
ENSMUST00000134260 N/A N/A N/A 8.198±1.63 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141468 N/A N/A N/A 2.711±0.00 N/A N/A N/A N/A N/A N/A 0.983±0.18 3.349±0.63 3.824±0.38 1.956±0.00
ENSMUST00000142037 N/A 1.769±0.00 N/A N/A 0.929±0.00 3.409±0.00 N/A N/A N/A 1.268±0.00 0.791±0.14 1.967±0.00 1.608±0.59 N/A
ENSMUSG00000074637 ENSMUST00000099151 0.021±0.00 0.311±0.07 0.903±0.05 44.409±21.13 0.068±0.03 0.319±0.04 0.242±0.20 0.026±0.01 0.090±0.12 9.554±0.98 0.050±0.02 0.064±0.04 0.048±0.02 0.031±0.01
ENSMUSG00000090828 ENSMUST00000163261 N/A N/A 0.083±0.00 3.647±0.00 N/A 0.034±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168995 N/A N/A N/A N/A 0.026±0.02 0.046±0.02 N/A 0.016±0.01 0.003±0.00 0.099±0.01 0.013±0.00 0.068±0.04 0.002±0.00 0.092±0.00
ENSMUST00000170492 N/A N/A 0.248±0.10 14.109±0.23 N/A N/A 0.019±0.00 N/A 0.004±0.00 N/A 0.049±0.01 N/A N/A 0.602±0.33
ENSMUST00000172560 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.265±0.00 N/A N/A N/A
ENSMUST00000172673 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172703 N/A N/A N/A N/A N/A N/A N/A N/A 0.011±0.00 N/A N/A N/A N/A N/A
ENSMUST00000172725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.333±0.00 N/A N/A N/A
ENSMUST00000172935 N/A N/A N/A N/A N/A 0.214±0.04 0.107±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173219 N/A 0.186±0.00 N/A N/A 0.134±0.00 0.197±0.01 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173276 N/A N/A N/A N/A 0.042±0.00 0.164±0.06 0.074±0.00 N/A 0.008±0.00 0.137±0.07 0.020±0.00 0.560±0.34 N/A N/A
ENSMUST00000173365 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173431 0.028±0.00 N/A N/A N/A 0.077±0.02 0.074±0.01 0.012±0.00 0.029±0.01 0.012±0.01 0.058±0.02 0.059±0.02 0.139±0.08 0.020±0.01 N/A
ENSMUST00000173845 N/A N/A N/A N/A 0.117±0.05 N/A N/A N/A N/A N/A 0.058±0.00 0.258±0.00 0.020±0.01 N/A
ENSMUST00000174087 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.061±0.00 0.370±0.00 N/A N/A
ENSMUST00000174785 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.106±0.00 N/A N/A N/A

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