C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATPase, class VI, type 11B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037400 Atp11b 10090 + 3:35754134-35856274 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029257 Atp11b-001 35754134-35856274 protein_coding
  ENSMUST00000108186 Atp11b-002 35754134-35829688 protein_coding
  ENSMUST00000125214 Atp11b-004 35838753-35856271 retained_intron
  ENSMUST00000134260 Atp11b-006 35838721-35856271 retained_intron
  ENSMUST00000138896 Atp11b-007 35807842-35810281 processed_transcript
  ENSMUST00000141468 Atp11b-005 35789606-35856274 protein_coding
  ENSMUST00000142037 Atp11b-003 35754134-35838280 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029257ENSMUST00000108186ENSMUST00000125214ENSMUST00000134260ENSMUST00000141468ENSMUST00000142037
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029257 5.335±1.97 5.713±1.41 5.714±0.20 2.426±0.00 5.915±2.17 16.815±2.73 2.607±0.37 5.572±0.93 4.913±0.89 7.169±0.72 2.173±0.86 6.809±1.91 8.140±1.35 6.158±2.11
ENSMUST00000108186 N/A 3.383±0.71 N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.177±0.00 10.006±2.83 6.259±0.00
ENSMUST00000125214 5.629±0.75 N/A 11.746±0.12 9.137±0.00 3.414±0.47 6.572±0.00 1.745±0.28 4.699±0.86 5.468±3.15 4.848±0.66 2.115±0.50 4.099±0.75 8.849±1.00 8.380±1.50
ENSMUST00000134260 N/A N/A N/A 8.198±1.63 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141468 N/A N/A N/A 2.711±0.00 N/A N/A N/A N/A N/A N/A 0.983±0.18 3.349±0.63 3.824±0.38 1.956±0.00
ENSMUST00000142037 N/A 1.769±0.00 N/A N/A 0.929±0.00 3.409±0.00 N/A N/A N/A 1.268±0.00 0.791±0.14 1.967±0.00 1.608±0.59 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005FX CIL_0005FX_0002 CGP 3:34650405-35856274
CIL_0005FW CIL_0005FW_0002 CGP 3:35754134-35937445

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000287 IEA magnesium ion binding
GO:0004012 IEA phospholipid-translocating ATPase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005783 IEA endoplasmic reticulum
GO:0008150 ND biological_process
GO:0008152 IEA metabolic process
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0019829 IEA cation-transporting ATPase activity
GO:0045332 IEA phospholipid translocation
GO:0055037 IEA recycling endosome
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054028 atp11b ATPase, class VI, type 11B protein_coding Danio_rerio
ENSG00000058063 ATP11B ATPase, class VI, type 11B protein_coding Homo_sapiens

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