C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007X4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm495 VISTA 9606 1:234243002-234844954
GeneTranscriptPositionBiotype
ENSG00000059588 (TARBP1)
TAR (HIV-1) RNA binding protein 1 		ENST00000040877 (TARBP1-001) 234391313-234479103 protein_coding
ENST00000462259 (TARBP1-003) 234391378-234406380 processed_transcript
ENST00000463793 (TARBP1-004) 234410404-234420814 processed_transcript
ENST00000468077 (TARBP1-005) 234398382-234405993 processed_transcript
ENST00000471918 (TARBP1-009) 234391598-234392724 processed_transcript
ENST00000481183 (TARBP1-006) 234400251-234410531 processed_transcript
ENST00000483404 (TARBP1-002) 234391339-234407955 processed_transcript
ENST00000484454 (TARBP1-007) 234398178-234400902 processed_transcript
ENST00000496673 (TARBP1-008) 234391410-234401216 processed_transcript
ENSG00000168264 (IRF2BP2)
interferon regulatory factor 2 binding protein 2 		ENST00000366609 (IRF2BP2-002) 234604269-234609525 protein_coding
ENST00000366610 (IRF2BP2-001) 234604269-234609525 protein_coding
ENST00000491430 (IRF2BP2-003) 234607231-234608094 processed_transcript
ENSG00000168275 (COA6)
cytochrome c oxidase assembly factor 6 homolog (S. cerevisiae) 		ENST00000366612 (COA6-003) 234373701-234384046 protein_coding
ENST00000366613 (COA6-002) 234373683-234384045 protein_coding
ENST00000366615 (COA6-001) 234373456-234384049 protein_coding
ENST00000619305 (COA6-201) 234373468-234384048 protein_coding
ENSG00000183780 (SLC35F3)
solute carrier family 35, member F3 		ENST00000366617 (SLC35F3-002) 234214271-234324511 protein_coding
ENST00000366618 (SLC35F3-001) 233904933-234324516 protein_coding
ENSG00000224939 (LINC00184)
long intergenic non-protein coding RNA 184 		ENST00000429269 (LINC00184-001) 234629311-234634780 lincRNA
ENSG00000227630 (LINC01132)
long intergenic non-protein coding RNA 1132 		ENST00000437601 (LINC01132-001) 234724042-234731643 lincRNA
ENSG00000228044 (RP4-781K5.4)
 ENST00000417805 (RP4-781K5.4-001) 234646289-234660924 lincRNA
ENST00000449012 (RP4-781K5.4-002) 234656125-234681122 retained_intron
ENST00000453568 (RP4-781K5.4-003) 234674096-234683176 lincRNA
ENSG00000228830 (RP4-781K5.2)
 ENST00000436039 (RP4-781K5.2-001) 234607008-234609483 antisense
ENSG00000230404 (RP5-855F14.2)
 ENST00000429507 (RP5-855F14.2-001) 234565298-234570088 lincRNA
ENSG00000230628 (RP4-781K5.6)
 ENST00000442382 (RP4-781K5.6-001) 234669523-234696153 lincRNA
ENSG00000231272 (RP4-799P18.4)
 ENST00000456078 (RP4-799P18.4-001) 234261706-234274465 sense_intronic
ENSG00000231663 (RP5-827C21.4)
 ENST00000451795 (RP5-827C21.4-001) 234372807-234373593 antisense
ENSG00000231768 (LINC01354)
long intergenic non-protein coding RNA 1354 		ENST00000421207 (LINC01354-002) 234529942-234531765 lincRNA
ENST00000435574 (LINC01354-001) 234527891-234531779 lincRNA
ENSG00000232166 (RP4-799P18.5)
 ENST00000412915 (RP4-799P18.5-001) 234284972-234285541 processed_pseudogene
ENSG00000235605 (RP5-827C21.1)
 ENST00000422958 (RP5-827C21.1-001) 234356704-234357141 processed_pseudogene
ENSG00000236244 (RP4-799P18.3)
 ENST00000446433 (RP4-799P18.3-001) 234268583-234272500 antisense
ENSG00000236358 (RP5-827C21.2)
 ENST00000425104 (RP5-827C21.2-001) 234357006-234365828 antisense
ENSG00000241475 (RP4-781K5.5)
 ENST00000441360 (RP4-781K5.5-001) 234660271-234667104 lincRNA
ENSG00000272362 (RP4-781K5.9)
 ENST00000607759 (RP4-781K5.9-001) 234644666-234647571 lincRNA
ENSG00000273367 (RP5-827C21.6)
 ENST00000610233 (RP5-827C21.6-001) 234372186-234372811 antisense
ENSG00000279261 (PP2672)
HCG1985569 {ECO:0000313|EMBL:EAW70000.1}; Putative uncharacterized protein PP2672 {ECO:0000313|EMBL:AAG22478.1} 		ENST00000624397 (PP2672-201) 234757621-234760056 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0007X4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm495 VISTA 10090 8:126236388-126837692
GeneTranscriptPositionBiotype
ENSMUSG00000051495 (Irf2bp2)
interferon regulatory factor 2 binding protein 2 		ENSMUST00000054960 (Irf2bp2-001) 126588296-126593986 protein_coding
ENSMUSG00000051671 (Coa6)
cytochrome c oxidase assembly factor 6 		ENSMUST00000059093 (Coa6-201) 126422501-126425434 protein_coding
ENSMUSG00000057060 (Slc35f3)
solute carrier family 35, member F3 		ENSMUST00000108759 (Slc35f3-001) 126298558-126395482 protein_coding
ENSMUSG00000074026 (Gm6091)
predicted pseudogene 6091 		ENSMUST00000098307 (Gm6091-201) 126476248-126476412 processed_pseudogene
ENSMUSG00000090290 (Gm17296)
predicted gene, 17296 		ENSMUST00000170518 (Gm17296-201) 126426652-126475065 protein_coding

Mus musculus Ensembl (GRCm38)

Genome
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Genes
Structures from Ensembl
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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007X4_0001ENSG00000059588ENST00000040877ENST00000462259ENST00000463793ENST00000468077ENST00000471918ENST00000481183ENST00000483404ENST00000484454ENST00000496673ENSG00000168264ENST00000366609ENST00000366610ENST00000491430ENSG00000168275ENST00000366612ENST00000366613ENST00000366615ENST00000619305ENSG00000183780ENST00000366617ENST00000366618ENSG00000224939ENST00000429269ENSG00000227630ENST00000437601ENSG00000228044ENST00000417805ENST00000449012ENST00000453568ENSG00000228830ENST00000436039ENSG00000230404ENST00000429507ENSG00000230628ENST00000442382ENSG00000231272ENST00000456078ENSG00000231663ENST00000451795ENSG00000231768ENST00000421207ENST00000435574ENSG00000232166ENST00000412915ENSG00000235605ENST00000422958ENSG00000236244ENST00000446433ENSG00000236358ENST00000425104ENSG00000241475ENST00000441360ENSG00000272362ENST00000607759ENSG00000273367ENST00000610233ENSG00000279261ENST00000624397CIL_0007X4_0002ENSMUSG00000051495ENSMUST00000054960ENSMUSG00000051671ENSMUST00000059093ENSMUSG00000057060ENSMUST00000108759ENSMUSG00000074026ENSMUST00000098307ENSMUSG00000090290ENSMUST00000170518
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000059588 ENST00000040877 0.710±0.00 N/A 0.473±0.00 N/A 1.978±0.00 1.604±0.00 0.725±0.54 0.971±0.26 0.333±0.00 0.884±0.25 0.911±0.00 3.637±3.50 2.318±0.54 2.368±0.22
ENST00000462259 N/A 3.300±0.00 N/A N/A 1.777±0.00 N/A N/A 1.405±0.00 N/A N/A N/A 4.404±2.14 1.460±0.13 1.352±0.00
ENST00000463793 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468077 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471918 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481183 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483404 N/A 2.008±0.00 N/A 0.962±0.00 N/A N/A N/A 0.339±0.15 0.216±0.00 1.003±0.30 N/A 2.171±0.75 N/A 2.678±2.08
ENST00000484454 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496673 N/A N/A N/A N/A N/A N/A N/A 2.453±0.00 1.041±0.00 N/A 1.008±0.00 N/A N/A N/A
ENSG00000168264 ENST00000366609 6.318±0.00 2.077±0.00 1.961±0.00 5.011±1.16 9.338±3.19 11.857±5.09 5.237±2.14 8.219±5.56 3.747±0.03 7.271±1.53 6.711±4.33 13.503±6.68 7.703±2.09 11.984±2.57
ENST00000366610 6.381±0.00 5.309±0.00 2.793±0.00 3.371±0.00 5.328±3.21 9.785±5.03 5.680±0.00 3.524±0.00 4.454±0.44 5.808±4.26 3.184±1.56 10.831±3.61 4.494±0.38 5.597±3.30
ENST00000491430 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000168275 ENST00000366612 N/A N/A 0.241±0.00 N/A N/A N/A N/A N/A 0.924±0.00 N/A N/A 0.250±0.00 N/A N/A
ENST00000366613 1.989±0.00 2.889±0.00 1.798±0.00 2.754±0.37 2.029±0.00 N/A 2.232±1.60 4.994±0.64 N/A 2.121±0.00 5.333±0.00 1.089±0.00 1.976±0.00 3.361±0.00
ENST00000366615 N/A 6.967±0.00 N/A 3.625±0.00 N/A N/A 2.893±0.00 N/A 2.923±0.00 N/A N/A 4.670±0.59 4.365±2.30 N/A
ENST00000619305 6.714±0.00 N/A N/A 6.684±2.94 7.411±5.24 11.258±8.51 4.529±2.72 19.764±0.00 8.857±0.00 7.133±0.00 9.424±3.88 9.847±7.32 8.527±3.69 8.618±5.51
ENSG00000183780 ENST00000366617 0.005±0.00 0.058±0.00 0.189±0.00 2.750±0.00 0.413±0.39 0.411±0.00 N/A 0.215±0.00 N/A 0.059±0.00 0.189±0.00 0.075±0.04 0.047±0.03 N/A
ENST00000366618 N/A N/A N/A 1.580±1.10 0.011±0.00 N/A N/A N/A N/A N/A N/A 0.116±0.00 N/A 0.123±0.03
ENSG00000224939 ENST00000429269 0.033±0.00 N/A N/A 0.095±0.07 0.214±0.17 N/A N/A N/A 0.018±0.00 N/A 0.028±0.01 0.026±0.02 0.034±0.00 0.022±0.00
ENSG00000227630 ENST00000437601 0.008±0.00 0.209±0.00 0.143±0.00 0.074±0.00 0.041±0.00 N/A 0.052±0.02 0.288±0.00 0.018±0.00 0.026±0.00 0.021±0.01 0.089±0.08 0.055±0.03 0.188±0.15
ENSG00000228044 ENST00000417805 N/A 0.012±0.00 N/A 0.063±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.028±0.00 0.518±0.18
ENST00000449012 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453568 N/A N/A N/A 0.081±0.00 N/A N/A N/A N/A N/A 0.038±0.00 N/A 0.030±0.01 0.055±0.00 0.061±0.00
ENSG00000228830 ENST00000436039 22.954±0.00 33.247±0.00 N/A 20.519±0.00 25.374±12.58 N/A 35.719±0.00 19.423±9.36 22.253±4.00 35.446±23.29 41.422±17.32 70.944±37.16 33.445±2.76 33.179±3.58
ENSG00000230404 ENST00000429507 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.483±0.00
ENSG00000230628 ENST00000442382 N/A 0.025±0.00 N/A 0.016±0.00 N/A N/A 0.009±0.01 0.049±0.00 0.047±0.00 N/A N/A 0.020±0.00 N/A 0.040±0.00
ENSG00000231272 ENST00000456078 N/A N/A N/A 0.092±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.192±0.16
ENSG00000231663 ENST00000451795 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.125±0.00 N/A N/A N/A
ENSG00000231768 ENST00000421207 N/A N/A N/A N/A N/A N/A 0.101±0.00 N/A N/A N/A N/A N/A 0.212±0.10 N/A
ENST00000435574 0.079±0.00 0.377±0.00 N/A 0.539±0.41 0.591±0.00 0.391±0.00 0.085±0.03 0.078±0.04 0.008±0.00 0.111±0.00 0.359±0.00 0.270±0.02 0.029±0.02 0.150±0.14
ENSG00000232166 ENST00000412915 0.022±0.00 N/A N/A 0.056±0.03 0.092±0.00 N/A N/A N/A N/A 0.021±0.00 0.020±0.00 0.037±0.00 N/A N/A
ENSG00000235605 ENST00000422958 0.075±0.00 0.333±0.00 N/A N/A 0.287±0.00 0.087±0.00 0.244±0.00 0.288±0.00 N/A 0.285±0.00 0.900±0.00 0.123±0.00 N/A 0.236±0.00
ENSG00000236244 ENST00000446433 N/A N/A N/A 0.036±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000236358 ENST00000425104 N/A 0.042±0.00 0.147±0.00 1.766±0.00 0.388±0.30 0.039±0.00 N/A 0.174±0.00 0.039±0.00 N/A N/A 0.085±0.02 N/A 0.596±0.37
ENSG00000241475 ENST00000441360 N/A N/A N/A N/A N/A N/A 0.060±0.00 0.049±0.00 N/A N/A N/A 0.044±0.02 N/A N/A
ENSG00000272362 ENST00000607759 0.179±0.00 N/A N/A 0.204±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.063±0.00
ENSG00000273367 ENST00000610233 N/A N/A N/A 2.939±0.22 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000279261 ENST00000624397 0.048±0.00 0.056±0.00 N/A 0.040±0.00 0.065±0.00 0.033±0.00 0.013±0.00 0.050±0.00 0.006±0.00 N/A 0.030±0.00 0.050±0.06 N/A 0.052±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000051495 ENSMUST00000054960 27.824±7.00 46.995±9.05 19.723±0.54 11.052±6.16 31.948±16.42 67.652±10.91 15.859±3.84 23.546±3.77 13.952±2.89 54.422±9.40 4.546±1.24 48.675±20.46 6.867±5.18 1.892±0.87
ENSMUSG00000051671 ENSMUST00000059093 21.170±2.94 49.006±24.12 16.242±2.33 15.133±6.66 37.822±18.00 50.789±3.66 10.378±4.76 66.508±17.18 29.001±14.05 30.564±8.40 11.235±1.00 29.449±18.68 12.406±4.63 4.747±2.57
ENSMUSG00000057060 ENSMUST00000108759 0.113±0.06 0.484±0.11 0.016±0.00 2.603±2.32 1.245±0.13 0.061±0.03 0.014±0.00 4.305±0.96 0.010±0.01 0.453±0.20 0.048±0.03 0.400±0.16 0.114±0.10 0.152±0.05
ENSMUSG00000074026 ENSMUST00000098307 N/A N/A N/A 3.699±0.00 N/A N/A N/A N/A N/A N/A N/A 5.495±0.00 1.016±0.00 N/A
ENSMUSG00000090290 ENSMUST00000170518 N/A 2.439±0.65 N/A 0.277±0.00 1.617±0.00 1.892±1.32 1.180±0.00 1.878±0.00 0.454±0.07 N/A 1.364±0.55 2.482±1.10 0.481±0.10 0.069±0.02

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